RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF12P17014 697 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 SLC6A9P48067 706 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 MTPNP58546 118 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 IL13RA1P78552 427 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 SELPLGQ14242 412 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 MIDNQ504T8 468 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 ZMAT1Q5H9K5 638 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 ARMC4Q5T2S8 1044 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 ALDH16A1Q8IZ83 802 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 SPICQ8N5J4 248 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 TAMM41Q96BW9 452 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 NMD3Q96D46 503 aaKnown RBP16.35■□□□□ 0.21
CLN3-262ENST00000637699 THOC1Q96FV9 657 aaKnown RBP16.35■□□□□ 0.21
CLN3-262ENST00000637699 MAGEB18Q96M61 343 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 OR2H1Q9GZK4 316 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 MS4A7Q9GZW8 240 aaPredicted RBP16.35■□□□□ 0.21
CLN3-262ENST00000637699 PCDHAC1Q9H158 963 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 WNT5BQ9H1J7 359 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 SMURF2Q9HAU4 748 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 CGGBP1Q9UFW8 167 aaPredicted RBP16.35■□□□□ 0.21
CLN3-262ENST00000637699 POLR3KQ9Y2Y1 108 aaPredicted RBP16.35■□□□□ 0.21
CLN3-262ENST00000637699 VWFP04275 2813 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 IGHV3OR16-10A0A075B7F0 116 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 LAP3P28838 519 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 LAPTM4AQ15012 233 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 TAF11Q15544 211 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 SLC9A3R2Q15599 337 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 MTX3Q5HYI7 312 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 FAM27BQ5VT28 67 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 LEG1Q6P5S2 330 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 SLC25A47Q6Q0C1 308 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 PATL1Q86TB9 770 aaKnown RBP16.34■□□□□ 0.21
CLN3-262ENST00000637699 JAZF1Q86VZ6 243 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 NKAIN4Q8IVV8 208 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 C1orf174Q8IYL3 243 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 TMEM255BQ8WV15 326 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 SGTBQ96EQ0 304 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 C20orf141Q9NUB4 165 aa16.34■□□□□ 0.21
CLN3-262ENST00000637699 STX18Q9P2W9 335 aaKnown RBP16.34■□□□□ 0.21
CLN3-262ENST00000637699 SOX21Q9Y651 276 aaPredicted RBP16.34■□□□□ 0.21
CLN3-262ENST00000637699 H3BSA7 217 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 VIMP08670 466 aaKnown RBP16.33■□□□□ 0.2
CLN3-262ENST00000637699 ARHGDIAP52565 204 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 PSG7Q13046 419 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 CDK5R2Q13319 367 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 TMEM155Q4W5P6 130 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 ZNF774Q6NX45 483 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 DHDDSQ86SQ9 333 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 LRRC28Q86X40 367 aaPredicted RBP16.33■□□□□ 0.2
CLN3-262ENST00000637699 OR2Z1Q8NG97 314 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 C4orf45Q96LM5 186 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 ELOVL3Q9HB03 270 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 TIMM10BQ9Y5J6 103 aa16.33■□□□□ 0.2
CLN3-262ENST00000637699 GPANK1O95872 356 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 MDKP21741 143 aaPredicted RBP16.32■□□□□ 0.2
CLN3-262ENST00000637699 TNFSF4P23510 183 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 BTG1P62324 171 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 TOP3AQ13472 1001 aaPredicted RBP16.32■□□□□ 0.2
CLN3-262ENST00000637699 ZMYND11Q15326 602 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 ZER1Q7Z7L7 766 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 ZNF283Q8N7M2 679 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 CLDN22Q8N7P3 220 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 OR52E2Q8NGJ4 325 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 CGREF1Q99674 301 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 OR5V1Q9UGF6 321 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 SH3GLB1Q9Y371 365 aa16.32■□□□□ 0.2
CLN3-262ENST00000637699 ICMTO60725 284 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 CST2P09228 141 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 IGHV4-38-2P0DP08 117 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 TNFRSF1AP19438 455 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 TNFRSF1BP20333 461 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 OMGP23515 440 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 CD80P33681 288 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 PCGF2P35227 344 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 TAS2R41P59536 307 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 ESCO2Q56NI9 601 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 ARL9Q6T311 187 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 SLC30A8Q8IWU4 369 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 TMEM239Q8WW34 195 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 SAMD8Q96LT4 415 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 RBP7Q96R05 134 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 SLITRK2Q9H156 845 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 TXNIPQ9H3M7 391 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 POFUT1Q9H488 388 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 KAT8Q9H7Z6 458 aaKnown RBP16.31■□□□□ 0.2
CLN3-262ENST00000637699 PPP1R3CQ9UQK1 317 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 NDUFAF1Q9Y375 327 aa16.31■□□□□ 0.2
CLN3-262ENST00000637699 A0A1W2PPL8 197 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 GMNCA6NCL1 334 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 A8MXK9 166 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 F5H0A9 414 aaPredicted RBP16.3■□□□□ 0.2
CLN3-262ENST00000637699 CLDN34H7C241 214 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 SHOX2O60902 331 aaPredicted RBP16.3■□□□□ 0.2
CLN3-262ENST00000637699 ABHD16AO95870 558 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 TSPAN19P0C672 248 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 NR2C1P13056 603 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 RBM34P42696 430 aaKnown RBP16.3■□□□□ 0.2
CLN3-262ENST00000637699 GUCA1AP43080 201 aaPredicted RBP16.3■□□□□ 0.2
CLN3-262ENST00000637699 MTNR1AP48039 350 aa16.3■□□□□ 0.2
CLN3-262ENST00000637699 CRYBA2P53672 197 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms