RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 NUAK2Q9H093 628 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 GABARAPL1Q9H0R8 117 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 EGLN3Q9H6Z9 239 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 RNF121Q9H920 327 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 SEC61A2Q9H9S3 476 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 CMC2Q9NRP2 79 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.82■□□□□ 0.12
CLN3-259ENST00000637551 ATP23Q9Y6H3 246 aa15.82■□□□□ 0.12
CLN3-259ENST00000637551 A0A1W2PPL8 197 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 H7C1C5 153 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 CD8AP01732 235 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 CELA3BP08861 270 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 OSMP13725 252 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 ZNF32P17041 273 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 CDAP32320 146 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 PTH2RP49190 550 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 FABP6P51161 128 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 SLC25A1P53007 311 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 LCN6P62502 163 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 HSF2Q03933 536 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 HGFACQ04756 655 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 PIGFQ07326 219 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 DAG1Q14118 895 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 ENDOGQ14249 297 aaKnown RBP15.81■□□□□ 0.12
CLN3-259ENST00000637551 SGCAQ16586 387 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 SLC36A3Q495N2 470 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 SLC27A4Q6P1M0 643 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 LEG1Q6P5S2 330 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 MYPOPQ86VE0 399 aaPredicted RBP15.81■□□□□ 0.12
CLN3-259ENST00000637551 OR8D4Q8NGM9 314 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 NEUROG1Q92886 237 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 FBXO17Q96EF6 278 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 CENPNQ96H22 339 aaPredicted RBP15.81■□□□□ 0.12
CLN3-259ENST00000637551 NMNAT3Q96T66 252 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 NIPSNAP1Q9BPW8 284 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 TSSK6Q9BXA6 273 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 OR2H1Q9GZK4 316 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 REV1Q9UBZ9 1251 aa15.81■□□□□ 0.12
CLN3-259ENST00000637551 TIPRLO75663 272 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 HMGN1P05114 100 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 GAAP10253 952 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 ZNF3P17036 446 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 APLNRP35414 380 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 SERPINF1P36955 418 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 RAD52P43351 418 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLN3-259ENST00000637551 RAB39AQ14964 217 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 SWI5Q1ZZU3 235 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 PABPC1L2AQ5JQF8 200 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 TMEM179BQ7Z7N9 219 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 ZDHHC13Q8IUH4 622 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 LRRC18Q8N456 261 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 SLC26A10Q8NG04 563 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 OR4K13Q8NH42 304 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 FGFBP3Q8TAT2 258 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 TMUB1Q9BVT8 246 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 RBM4Q9BWF3 364 aaKnown RBP15.8■□□□□ 0.12
CLN3-259ENST00000637551 ZNF416Q9BWM5 594 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 PLK3Q9H4B4 646 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 B9D1Q9UPM9 204 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 PMF1-BGLAPU3KQ54 211 aa15.8■□□□□ 0.12
CLN3-259ENST00000637551 OR6C68A6NDL8 312 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 RIIAD1A6NNX1 92 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 STOMP27105 288 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 PPOXP50336 477 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 SNRPD2P62316 118 aaKnown RBP15.79■□□□□ 0.12
CLN3-259ENST00000637551 ESRRGP62508 458 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 HIST1H3AP68431 136 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 PSG4Q00888 419 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 PPP1R8Q12972 351 aaKnown RBP15.79■□□□□ 0.12
CLN3-259ENST00000637551 SNTB2Q13425 540 aaKnown RBP15.79■□□□□ 0.12
CLN3-259ENST00000637551 ADIPOQQ15848 244 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 CLEC12AQ5QGZ9 265 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 ZNF362Q5T0B9 420 aaPredicted RBP15.79■□□□□ 0.12
CLN3-259ENST00000637551 HIST2H3PS2Q5TEC6 136 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 ARL9Q6T311 187 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 HIST2H3AQ71DI3 136 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 OR6V1Q8N148 313 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 ATG16L2Q8NAA4 619 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 OR52E2Q8NGJ4 325 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 MS4A3Q96HJ5 214 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 DCLRE1CQ96SD1 692 aaKnown RBP15.79■□□□□ 0.12
CLN3-259ENST00000637551 PRRG3Q9BZD7 231 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 NMNAT2Q9BZQ4 307 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 CDH20Q9HBT6 801 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 SLC25A19Q9HC21 320 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 KIF17Q9P2E2 1029 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 COA3Q9Y2R0 106 aaPredicted RBP15.79■□□□□ 0.12
CLN3-259ENST00000637551 CMAHPQ9Y471 501 aa15.79■□□□□ 0.12
CLN3-259ENST00000637551 G3V2T6 193 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 H3BN98 237 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 CD99P14209 185 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 PAICSP22234 425 aaKnown RBP15.78■□□□□ 0.12
CLN3-259ENST00000637551 TGIF2LYQ8IUE0 185 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 SDR9C7Q8NEX9 313 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 GJC3Q8NFK1 279 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 POM121L2Q96KW2 1035 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 COG8Q96MW5 612 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 HDHD2Q9H0R4 259 aa15.78■□□□□ 0.12
CLN3-259ENST00000637551 RPRD1BQ9NQG5 326 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms