RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 RAB1AP62820 205 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 CLEC12BQ2HXU8 276 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 DPPA2Q7Z7J5 298 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.46■□□□□ 0.07
CLN3-247ENST00000636351 GLB1L2Q8IW92 636 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 CYB561A3Q8NBI2 242 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 LILRB1Q8NHL6 650 aaPredicted RBP15.46■□□□□ 0.07
CLN3-247ENST00000636351 NABP1Q96AH0 204 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 TSSK2Q96PF2 358 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 SNX18Q96RF0 628 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 REPIN1Q9BWE0 567 aaKnown RBP15.46■□□□□ 0.07
CLN3-247ENST00000636351 TEX12Q9BXU0 123 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 GABARAPL1Q9H0R8 117 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 POLE4Q9NR33 117 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 B3GNT2Q9NY97 397 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 ZNF224Q9NZL3 707 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 CRNNQ9UBG3 495 aaPredicted RBP15.46■□□□□ 0.07
CLN3-247ENST00000636351 COA3Q9Y2R0 106 aaPredicted RBP15.46■□□□□ 0.07
CLN3-247ENST00000636351 POLR1DQ9Y2S0 133 aa15.46■□□□□ 0.07
CLN3-247ENST00000636351 ANK3Q12955 4377 aaKnown RBP15.45■□□□□ 0.06
CLN3-247ENST00000636351 BAG2O95816 211 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 IGKV3-15P01624 115 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 IGLV1-44P01699 117 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 CRYAAP02489 173 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 SOD3P08294 240 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 ZNF3P17036 446 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 IGFBP5P24593 272 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 LAP3P28838 519 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 GRK5P34947 590 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 HSF2Q03933 536 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 SLC27A4Q6P1M0 643 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 MYPOPQ86VE0 399 aaPredicted RBP15.45■□□□□ 0.06
CLN3-247ENST00000636351 FAM169BQ8N8A8 192 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 SLC37A3Q8NCC5 494 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 PROKR2Q8NFJ6 384 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 SPATA3Q8NHX4 192 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 FGFBP3Q8TAT2 258 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 NEUROG1Q92886 237 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 OTULINQ96BN8 352 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 SRA1Q9HD15 236 aaKnown RBP15.45■□□□□ 0.06
CLN3-247ENST00000636351 EMC7Q9NPA0 242 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 FBXL3Q9UKT7 428 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 MOKQ9UQ07 419 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 ATP23Q9Y6H3 246 aa15.45■□□□□ 0.06
CLN3-247ENST00000636351 FBN1P35555 2871 aaKnown RBP15.45■□□□□ 0.06
CLN3-247ENST00000636351 HEATR1Q9H583 2144 aaKnown RBP15.44■□□□□ 0.06
CLN3-247ENST00000636351 OR6C68A6NDL8 312 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 SHISA9B4DS77 424 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 ATP6V1G2-DDX39BF2Z307 99 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 MGRN1O60291 552 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 HLA-DQA2P01906 255 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 CDKN1AP38936 164 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 NAAAQ02083 359 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 PLP2Q04941 152 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 CRMP1Q14194 572 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 GINS1Q14691 196 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 RAB39AQ14964 217 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 C3orf36Q3SXR2 165 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 ZNF672Q499Z4 452 aaPredicted RBP15.44■□□□□ 0.06
CLN3-247ENST00000636351 FOXL2NBQ6ZUU3 175 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 NPEPL1Q8NDH3 523 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 OR9Q1Q8NGQ5 310 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 FBXW5Q969U6 566 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 TRMT61AQ96FX7 289 aaKnown RBP15.44■□□□□ 0.06
CLN3-247ENST00000636351 MS4A3Q96HJ5 214 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 PLEKHA8Q96JA3 519 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 RACGAP1Q9H0H5 632 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 CMC2Q9NRP2 79 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 B9D1Q9UPM9 204 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 FKBP7Q9Y680 259 aa15.44■□□□□ 0.06
CLN3-247ENST00000636351 IGLV1-36A0A0B4J1U3 117 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 C12orf71A8MTZ7 269 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 OVOL3O00110 214 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 DCTN6O00399 190 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 MITFO75030 526 aaPredicted RBP15.43■□□□□ 0.06
CLN3-247ENST00000636351 CST2P09228 141 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 DANCRP0C864 163 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 ZNF32P17041 273 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 PAICSP22234 425 aaKnown RBP15.43■□□□□ 0.06
CLN3-247ENST00000636351 PCBD1P61457 104 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 GLO1Q04760 184 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 DBPQ10586 325 aaPredicted RBP15.43■□□□□ 0.06
CLN3-247ENST00000636351 FAM27BQ5VT28 67 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 OTPQ5XKR4 325 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 OR6V1Q8N148 313 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 PQLC1Q8N2U9 271 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 PARP8Q8N3A8 854 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 OR2T4Q8NH00 348 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 RBM4BQ9BQ04 359 aaKnown RBP15.43■□□□□ 0.06
CLN3-247ENST00000636351 RBM4Q9BWF3 364 aaKnown RBP15.43■□□□□ 0.06
CLN3-247ENST00000636351 ZNF416Q9BWM5 594 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 REG4Q9BYZ8 158 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 ENOPH1Q9UHY7 261 aa15.43■□□□□ 0.06
CLN3-247ENST00000636351 IQCMA0A1B0GVH7 501 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 MPZL1O95297 269 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 GPANK1O95872 356 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 SCG5P05408 212 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 ZNF14P17017 642 aaPredicted RBP15.42■□□□□ 0.06
CLN3-247ENST00000636351 PYCR1P32322 319 aa15.42■□□□□ 0.06
CLN3-247ENST00000636351 CRISP1P54107 249 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms