RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 A4GNTQ9UNA3 340 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 HIF3AQ9Y2N7 669 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 TIMM10BQ9Y5J6 103 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 SNX13Q9Y5W8 968 aa13.67□□□□□ -0.22
CLN3-246ENST00000636228 LOC100653049A0A140TA62 436 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 J3KTA2 159 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 J3QLI3 93 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 WIPF1O43516 503 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 KRT34O76011 436 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 CST2P09228 141 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 KDELR2P33947 212 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 ENDOGQ14249 297 aaKnown RBP13.66□□□□□ -0.22
CLN3-246ENST00000636228 TAF11Q15544 211 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 METTL21CQ5VZV1 264 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 OTPQ5XKR4 325 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 ALDH16A1Q8IZ83 802 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 TEX29Q8N6K0 151 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 ALG12Q9BV10 488 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 C1QTNF5Q9BXJ0 243 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 EMC7Q9NPA0 242 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 MMP26Q9NRE1 261 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 EGFL7Q9UHF1 273 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 PPIAL4AQ9Y536 164 aa13.66□□□□□ -0.22
CLN3-246ENST00000636228 NPIPB13A6NJU9 1138 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 HMGB1P1B2RPK0 211 aaPredicted RBP13.65□□□□□ -0.22
CLN3-246ENST00000636228 NPIPB4C9JG80 1138 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 TIMM8AO60220 97 aaPredicted RBP13.65□□□□□ -0.22
CLN3-246ENST00000636228 PRSS23O95084 383 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 IFNA14P01570 189 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 THRBP10828 461 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 TNFAIP6P98066 277 aaPredicted RBP13.65□□□□□ -0.22
CLN3-246ENST00000636228 ST3GAL3Q11203 375 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 PSG7Q13046 419 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 KLF10Q13118 480 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 FHL1Q13642 323 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 ST7LQ8TDW4 575 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 JMJD8Q96S16 334 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 CYSLTR2Q9NS75 346 aa13.65□□□□□ -0.22
CLN3-246ENST00000636228 FSHBP01225 129 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 IGHMP01871 453 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 GUCA1AP43080 201 aaPredicted RBP13.64□□□□□ -0.23
CLN3-246ENST00000636228 ARHGDIAP52565 204 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 PCBD1P61457 104 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 SLC3A1Q07837 685 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 AWAT1Q58HT5 328 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 MTX3Q5HYI7 312 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 ERICH5Q6P6B1 374 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 TBPL2Q6SJ96 375 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 UNQ6126/PRO20091Q6UXV3 157 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 FOXL2NBQ6ZUU3 175 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 VTCN1Q7Z7D3 282 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 NRMQ8IXM6 262 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 OR13C2Q8NGS9 318 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 PRRC1Q96M27 445 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 DUX5Q96PT3 197 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 ELOVL3Q9HB03 270 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 ZDHHC8Q9ULC8 765 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 NPTNQ9Y639 398 aa13.64□□□□□ -0.23
CLN3-246ENST00000636228 GMNCA6NCL1 334 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 EFCAB9A8MZ26 197 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 FAM220BPB1ANY3 271 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 FFAR1O14842 300 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 ABHD16AO95870 558 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 IGHV2-70P01814 119 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 CD55P08174 381 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 ADH4P08319 380 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 NR2C1P13056 603 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 MSR1P21757 451 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 GATA3P23771 443 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 LIPAP38571 399 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 LIMS1P48059 325 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 ERFP50548 548 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 SEC61A1P61619 476 aaKnown RBP13.63□□□□□ -0.23
CLN3-246ENST00000636228 UBA52P62987 128 aaKnown RBP13.63□□□□□ -0.23
CLN3-246ENST00000636228 SELENOWP63302 87 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 CDK5R2Q13319 367 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 C1orf94Q6P1W5 598 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 Q6ZR03 302 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 OAFQ86UD1 273 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 TREML1Q86YW5 311 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 BCL6BQ8N143 479 aaPredicted RBP13.63□□□□□ -0.23
CLN3-246ENST00000636228 SIGLECL1Q8N7X8 197 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 OR2T12Q8NG77 320 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 OR2Z1Q8NG97 314 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 SLC7A6Q92536 515 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 DVL3Q92997 716 aaPredicted RBP13.63□□□□□ -0.23
CLN3-246ENST00000636228 SIKE1Q9BRV8 207 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 SAR1AQ9NR31 198 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 POLE4Q9NR33 117 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 MAN2C1Q9NTJ4 1040 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 TMEM106BQ9NUM4 274 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 ARGLU1Q9NWB6 273 aaPredicted RBP13.63□□□□□ -0.23
CLN3-246ENST00000636228 STARD10Q9Y365 291 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 ADAM18Q9Y3Q7 739 aa13.63□□□□□ -0.23
CLN3-246ENST00000636228 C12orf71A8MTZ7 269 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 TRAPPC2LH3BP13 241 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 ICMTO60725 284 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 ZNF26P17031 533 aaPredicted RBP13.62□□□□□ -0.23
CLN3-246ENST00000636228 FPR2P25090 351 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 HTR5AP47898 357 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms