RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 SCOCQ9UIL1 159 aa11.06□□□□□ -0.64
PNKP-217ENST00000625216 LAMP3Q9UQV4 416 aa11.06□□□□□ -0.64
PNKP-217ENST00000625216 AMDHD2Q9Y303 409 aa11.06□□□□□ -0.64
PNKP-217ENST00000625216 TPRKBQ9Y3C4 175 aa11.06□□□□□ -0.64
PNKP-217ENST00000625216 LOC102725191A0A1B0GVB3 256 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 OR6C68A6NDL8 312 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 NPIPB13A6NJU9 1138 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 NPIPB4C9JG80 1138 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 PTGES3LE9PB15 166 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 PRR23D1E9PI22 279 aaPredicted RBP11.05□□□□□ -0.64
PNKP-217ENST00000625216 TRAF3IP2O43734 574 aaPredicted RBP11.05□□□□□ -0.64
PNKP-217ENST00000625216 MT-ND2P03891 347 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 PRR23D2P0DMB1 279 aaPredicted RBP11.05□□□□□ -0.64
PNKP-217ENST00000625216 CLUP10909 449 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 ATP6V1B1P15313 513 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 SLC2A5P22732 501 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 CDH11P55287 796 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 ATP5J2P56134 94 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 RPL27P61353 136 aaKnown RBP11.05□□□□□ -0.64
PNKP-217ENST00000625216 CSNK2BP67870 215 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 ETFDHQ16134 617 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 ARMC4Q5T2S8 1044 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 LEG1Q6P5S2 330 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 JAZF1Q86VZ6 243 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 GID4Q8IVV7 300 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 ARIH2OSQ8N7S6 290 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 ZNF540Q8NDQ6 660 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 KBTBD8Q8NFY9 601 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 PTP4A1Q93096 173 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 OTULINQ96BN8 352 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 COX4I2Q96KJ9 171 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 Q96MT0 163 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 NMNAT3Q96T66 252 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 NMNAT2Q9BZQ4 307 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 GSX1Q9H4S2 264 aaPredicted RBP11.05□□□□□ -0.64
PNKP-217ENST00000625216 OBP2BQ9NPH6 170 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 SLC17A5Q9NRA2 495 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 MED29Q9NX70 200 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 CISD1Q9NZ45 108 aaKnown RBP11.05□□□□□ -0.64
PNKP-217ENST00000625216 NPAP1Q9NZP6 1156 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 GRHPRQ9UBQ7 328 aa11.05□□□□□ -0.64
PNKP-217ENST00000625216 NIPBLQ6KC79 2804 aaeCLIP11.04□□□□□ -0.64
PNKP-217ENST00000625216 A0A087WXM4 84 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 A0A1W2PRG6 482 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 SHISA9B4DS77 424 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 ABCD4O14678 606 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 KRT33AO76009 404 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 APOL3O95236 402 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 WNT11O96014 354 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 GYPBP06028 91 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 SOD3P08294 240 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 PIPP12273 146 aaPredicted RBP11.04□□□□□ -0.64
PNKP-217ENST00000625216 IFNGR1P15260 489 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 ZNF43P17038 809 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 EEF1B2P24534 225 aaKnown RBP11.04□□□□□ -0.64
PNKP-217ENST00000625216 CD40P25942 277 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 HTR1FP30939 366 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 ACVR1BP36896 505 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 ZNF83P51522 516 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 FOXG1P55316 489 aaPredicted RBP11.04□□□□□ -0.64
PNKP-217ENST00000625216 MVKQ03426 396 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 RUNX1T1Q06455 604 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 KRTAP21-3Q3LHN1 58 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 SLC35D2Q76EJ3 337 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 PXKQ7Z7A4 578 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 DTX2Q86UW9 622 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 WDR31Q8NA23 367 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 ZNRF4Q8WWF5 429 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 IPCEF1Q8WWN9 437 aaPredicted RBP11.04□□□□□ -0.64
PNKP-217ENST00000625216 NEUROG1Q92886 237 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 RNFT2Q96EX2 444 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 TXNDC15Q96J42 360 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 OXGR1Q96P68 337 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 COPS4Q9BT78 406 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 LINC00470Q9BZP3 86 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 OR51V1Q9H2C8 321 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 CCNB1IP1Q9NPC3 277 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 CNOT2Q9NZN8 540 aaKnown RBP11.04□□□□□ -0.64
PNKP-217ENST00000625216 RCE1Q9Y256 329 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 RPL36Q9Y3U8 105 aaKnown RBP11.04□□□□□ -0.64
PNKP-217ENST00000625216 PRR14LQ5THK1 2151 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 DSCAMO60469 2012 aa11.04□□□□□ -0.64
PNKP-217ENST00000625216 EFCAB10A6NFE3 127 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 ZNF587BE7ETH6 402 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 H7C1Q1 480 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 RGS10O43665 173 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 TFAP2AP05549 437 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 CDK1P06493 297 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 HOXB1P14653 301 aaPredicted RBP11.03□□□□□ -0.64
PNKP-217ENST00000625216 SPI1P17947 270 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 PAICSP22234 425 aaKnown RBP11.03□□□□□ -0.64
PNKP-217ENST00000625216 DAP3P51398 398 aaKnown RBP11.03□□□□□ -0.64
PNKP-217ENST00000625216 SLC25A1P53007 311 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 BIDP55957 195 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 TUBA4AP68366 448 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 KLHL12Q53G59 568 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 AGAP6Q5VW22 663 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 SLC22A25Q6T423 547 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 KLHL24Q6TFL4 600 aa11.03□□□□□ -0.64
PNKP-217ENST00000625216 CLEC9AQ6UXN8 241 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms