RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MAPK3P27361 379 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 RIDAP52758 137 aaKnown RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 RRAS2P62070 204 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 RASGEF1BQ0VAM2 473 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 FCN2Q15485 313 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 DMRTC1Q5HYR2 192 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 ALKBH2Q6NS38 261 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 AGBL5Q8NDL9 886 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 SLC26A10Q8NG04 563 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 RNF128Q8TEB7 428 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 SMIM4Q8WVI0 70 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 KCNK17Q96T54 332 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 TMEM246Q9BRR3 403 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 DPAGT1Q9H3H5 408 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 EMC7Q9NPA0 242 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 C19orf25Q9UFG5 118 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 CGGBP1Q9UFW8 167 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 FOXJ3Q9UPW0 622 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 B3GALT1Q9Y5Z6 326 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 CACNA1HO95180 2353 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 A0A1W2PPC1 479 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 A0A1W2PPL8 197 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 GPR171O14626 319 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 KDM4BO94953 1096 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 FGF5P12034 268 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 CRABP1P29762 137 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 DCTDP32321 178 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 ART1P52961 327 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 SPOCK1Q08629 439 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 TMEM225Q6GV28 225 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 KCTD18Q6PI47 426 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 BIVMQ86UB2 503 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 OR4K17Q8NGC6 315 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 OR52N5Q8NH56 324 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 SLC22A8Q8TCC7 542 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 PHYHIPQ92561 330 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 TTC9Q92623 222 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 MCHR2Q969V1 340 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 RNF170Q96K19 258 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 ZNF160Q9HCG1 818 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 PRMT8Q9NR22 394 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 TAS2R4Q9NYW5 299 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 KLHL13Q9P2N7 655 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 HS3ST3B1Q9Y662 390 aa9.49□□□□□ -0.89
CUX1-221ENST00000622516 CHCHD2Q9Y6H1 151 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 TNRC6BQ9UPQ9 1833 aaKnown RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 NCOA6Q14686 2063 aaPredicted RBP9.49□□□□□ -0.89
CUX1-221ENST00000622516 TRBV5-7A0A0A0MS05 114 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 IGHV3-15A0A0B4J1V0 119 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 TMEM269A0A1B0GVZ9 245 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 KHDRBS3O75525 346 aaKnown RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 CCL3P10147 92 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 SLC2A1P11166 492 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 CXCL3P19876 107 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 HOXA6P31267 233 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 KLF9Q13886 244 aaPredicted RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 TEX30Q5JUR7 227 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ZNF468Q5VIY5 522 aaPredicted RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 OR10K2Q6IF99 312 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 OR2M3Q8NG83 312 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ELP5Q8TE02 316 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ASB5Q8WWX0 329 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ZNF775Q96BV0 537 aaPredicted RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 CMKLR1Q99788 373 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.48□□□□□ -0.899e-7■■□□□ 14.3
CUX1-221ENST00000622516 CDCP1Q9H5V8 836 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ZMAT3Q9HA38 289 aaKnown RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 MOV10Q9HCE1 1003 aaKnown RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 SDHAF3Q9NRP4 125 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 DHDHQ9UQ10 334 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 P2RY10O00398 339 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 PHYHO14832 338 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 AKR7A2O43488 359 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 TSPAN9O75954 239 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 IL11RAQ14626 422 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 FAM198BQ6UWH4 519 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 C11orf40Q8WZ69 217 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 AKAP1Q92667 903 aaKnown RBP eCLIP9.48□□□□□ -0.891e-6■■■■□ 21.5
CUX1-221ENST00000622516 MFRPQ9BY79 579 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 OR2B2Q9GZK3 357 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 OR10A4Q9H209 315 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 SLC26A1Q9H2B4 701 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 SLC39A1Q9NY26 324 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ZNF222Q9UK12 451 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 IGHV1-45A0A0A0MS14 117 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 IGHMP01871 453 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ANOS1P23352 680 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 POU3F4P49335 361 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 DAP3P51398 398 aaKnown RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 TAS2R20P59543 309 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 GUCA2AQ02747 115 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.48□□□□□ -0.89
CUX1-221ENST00000622516 ST7LQ8TDW4 575 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 ASB17Q8WXJ9 295 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 MIB2Q96AX9 1013 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 HAVCR1Q96D42 359 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 MNTQ99583 582 aa9.48□□□□□ -0.89
CUX1-221ENST00000622516 DMXL1Q9Y485 3027 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 NTN3O00634 580 aaPredicted RBP9.47□□□□□ -0.89
CUX1-221ENST00000622516 ZNF208O43345 1280 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms