RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RBM4BQ9BQ04 359 aaKnown RBP14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 TIMM10BQ9Y5J6 103 aa14.35□□□□□ -0.11
CCDC28A-202ENST00000611852 RTTNQ86VV8 2226 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 C12orf71A8MTZ7 269 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 E7EQL1 145 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 SURF4O15260 269 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 TFP02787 698 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 RAF1P04049 648 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 HMGN1P05114 100 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF35P13682 527 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 EPHA2P29317 976 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC25A1P53007 311 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 PSG4Q00888 419 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 MEP1BQ16820 701 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 SYT9Q86SS6 491 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 CPEB3Q8NE35 698 aaKnown RBP14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNRF4Q8WWF5 429 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 WACQ9BTA9 647 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 OR2H1Q9GZK4 316 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 ENOPH1Q9UHY7 261 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 EDARQ9UNE0 448 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 PLEKHA6Q9Y2H5 1048 aa14.34□□□□□ -0.11
CCDC28A-202ENST00000611852 DSCAMO60469 2012 aa14.33□□□□□ -0.11
CCDC28A-202ENST00000611852 TEX15Q9BXT5 2789 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 IQCMA0A1B0GVH7 501 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 FAM183AA6NL82 134 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 ATE1O95260 518 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 PTHP01270 115 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 ALPLP05186 524 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 SPI1P17947 270 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 CD53P19397 219 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 PYCR1P32322 319 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 HGFACQ04756 655 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 PLP2Q04941 152 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 AQP6Q13520 282 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 KEAP1Q14145 624 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 SLC30A7Q8NEW0 376 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 PROKR2Q8NFJ6 384 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 AKR7LQ8NHP1 331 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 NINJ1Q92982 152 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 PTP4A1Q93096 173 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 HCAR1Q9BXC0 346 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 TEX12Q9BXU0 123 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 WNT5BQ9H1J7 359 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 C1orf198Q9H425 327 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 ASH2LQ9UBL3 628 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 ATP23Q9Y6H3 246 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 MAST4O15021 2626 aa14.33□□□□□ -0.12
CCDC28A-202ENST00000611852 EI24O14681 340 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 BAG2O95816 211 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 GYPBP06028 91 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 DANCRP0C864 163 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 CLUP10909 449 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 APEX1P27695 318 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 TEKQ02763 1124 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 DAG1Q14118 895 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 CBR4Q8N4T8 237 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 OR4F15Q8NGB8 312 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 OR51L1Q8NGJ5 315 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 SMAP2Q8WU79 429 aaPredicted RBP14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 DHRS9Q9BPW9 319 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 GABARAPL3Q9BY60 117 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 MED20Q9H944 212 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 MRPL22Q9NWU5 206 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 USE1Q9NZ43 259 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 CCDC168Q8NDH2 2452 aa14.32□□□□□ -0.12
CCDC28A-202ENST00000611852 ZAR1LA6NP61 321 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 HLA-DQA2P01906 255 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 CCL2P13500 99 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 DNASE1P24855 282 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 POLR2IP36954 125 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 ALDH3A2P51648 485 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 SLC34A1Q06495 639 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 SCRN3Q0VDG4 424 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 SLX4IPQ5VYV7 408 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 ZNF774Q6NX45 483 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 ALDH16A1Q8IZ83 802 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 PAQR4Q8N4S7 273 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 NUP37Q8NFH4 326 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 IGFBPL1Q8WX77 278 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 C9orf16Q9BUW7 83 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 TVP23BQ9NYZ1 205 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 NKX1-2Q9UD57 310 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 POLR1DQ9Y2S0 133 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 LHFPL6Q9Y693 200 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 PRR23D1E9PI22 279 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 SNAP29O95721 258 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 SOD3P08294 240 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 PRR23D2P0DMB1 279 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 PAICSP22234 425 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 NR4A1P22736 598 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 STOMP27105 288 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 APLNRP35414 380 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 NKX6-1P78426 367 aaPredicted RBP14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 SNAPC1Q16533 368 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 TBC1D28Q2M2D7 210 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 ZNF544Q6NX49 715 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 PLBD1Q6P4A8 553 aa14.31□□□□□ -0.12
CCDC28A-202ENST00000611852 LYPD4Q6UWN0 246 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms