RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CST11Q9H112 138 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 UPB1Q9UBR1 384 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 A0A087WUJ7 227 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 PNPP00491 289 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 CRYBA1P05813 215 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ZNF806P0C7X5 589 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 LSSP48449 732 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 TAS2R19P59542 299 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 TFF2Q03403 129 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 KLHL26Q53HC5 615 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ETV3LQ6ZN32 361 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 OR5M8Q8NGP6 311 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ELP5Q8TE02 316 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 DCUN1D4Q92564 292 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 CYYR1Q96J86 154 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 TIMM29Q9BSF4 260 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 NMNAT2Q9BZQ4 307 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.56■□□□□ 0.24
UPF1-210ENST00000600689 PILRAQ9UKJ1 303 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 MKL2Q9ULH7 1088 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 VSIG4Q9Y279 399 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 TICRRQ7Z2Z1 1910 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 PLRG1O43660 514 aaKnown RBP16.56■□□□□ 0.24
UPF1-210ENST00000600689 ITGB2P05107 769 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 RBM34P42696 430 aaKnown RBP16.56■□□□□ 0.24
UPF1-210ENST00000600689 IL13RA1P78552 427 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 ZNF542PQ5EBM4 170 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 DMRTC1Q5HYR2 192 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 CCDC36Q8IYA8 594 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 SPAG16Q8N0X2 631 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 DZANK1Q9NVP4 752 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 NDRG3Q9UGV2 375 aa16.56■□□□□ 0.24
UPF1-210ENST00000600689 BRWD1Q9NSI6 2320 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 ARHGEF17Q96PE2 2063 aaPredicted RBP16.55■□□□□ 0.24
UPF1-210ENST00000600689 URADA6NGE7 173 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 PDZK1IP1Q13113 114 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 C1QL3Q5VWW1 255 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 OR5T2Q8NGG2 359 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 NUDCD2Q8WVJ2 157 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 OR1E3Q8WZA6 343 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 PIGMQ9H3S5 423 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 ZNF629Q9UEG4 869 aaPredicted RBP16.55■□□□□ 0.24
UPF1-210ENST00000600689 EML5Q05BV3 1969 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 TRBV5-5A0A0J9YX44 114 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 LOC100289279A0A1B0GTE1 492 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 A0A1W2PQF6 199 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 CYR61O00622 381 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 LMX1BO60663 402 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 ABHD16AO95870 558 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 SLC35D3Q5M8T2 416 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 NPSR1Q6W5P4 371 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 ZNF550Q7Z398 422 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 PRR22Q8IZ63 422 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 CAMKVQ8NCB2 501 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 ELSPBP1Q96BH3 223 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 KTI12Q96EK9 354 aaPredicted RBP16.55■□□□□ 0.24
UPF1-210ENST00000600689 B9D1Q9UPM9 204 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 SEC16AO15027 2179 aa16.55■□□□□ 0.24
UPF1-210ENST00000600689 IGKV1D-42A0A075B6H8 117 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 NKX2-2O95096 273 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 OR6A2O95222 327 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 CD14P08571 375 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 PI3P19957 117 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ZNF10P21506 573 aaPredicted RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 BTG2P78543 158 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 RPL18Q07020 188 aaKnown RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 MESTQ5EB52 335 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ARMC10Q8N2F6 343 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ADAD2Q8NCV1 583 aaKnown RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 OR13C8Q8NGS7 320 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 GPX8Q8TED1 209 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ZNF524Q96C55 264 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 LPAR4Q99677 370 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 FAM117AQ9C073 453 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 CTSFQ9UBX1 484 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 MRPS18BQ9Y676 258 aaKnown RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 GPR89AB7ZAQ6 455 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 GPR89BP0CG08 455 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 HOXA1P49639 335 aaPredicted RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 ACTBP60709 375 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ACTG1P63261 375 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 GPR18Q14330 331 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 MPPED2Q15777 294 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ACOT7LQ6ZUV0 252 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ZNF563Q8TA94 476 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ANKRD9Q96BM1 317 aaPredicted RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 INTS14Q96SY0 518 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ZFYVE21Q9BQ24 234 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 PARP12Q9H0J9 701 aaKnown RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 KLK13Q9UKR3 277 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 DHDHQ9UQ10 334 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 CSAG2Q9Y5P2 127 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 PRSS38A1L453 326 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 ZNF208O43345 1280 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 NUDT14O95848 222 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 NTSR1P30989 418 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 MEOX2P50222 304 aa16.54■□□□□ 0.24
UPF1-210ENST00000600689 SNRPEP62304 92 aaKnown RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 MFGE8Q08431 387 aaPredicted RBP16.54■□□□□ 0.24
UPF1-210ENST00000600689 CORO6Q6QEF8 472 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms