RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PPIAL4DF5H284 164 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 SLC2A10O95528 541 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 IFNW1P05000 195 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 MMP7P09237 267 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-212ENST00000597995 PPIAL4FP0DN26 164 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF26P17031 533 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-212ENST00000597995 ADRA2CP18825 462 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 PRDX6P30041 224 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 APLNRP35414 380 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 LIPAP38571 399 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF81P51508 661 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF84P51523 738 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 CLRN1P58418 232 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 UBA52P62987 128 aaKnown RBP10.62□□□□□ -0.71
TRIM28-212ENST00000597995 PRKCDQ05655 676 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 FMODQ06828 376 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 SLC3A1Q07837 685 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 FOXL1Q12952 345 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 TUSC1Q2TAM9 212 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 IFI44LQ53G44 452 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 SHISA2Q6UWI4 295 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 UNQ6126/PRO20091Q6UXV3 157 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 NRMQ8IXM6 262 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 C1orf174Q8IYL3 243 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 FAM86B1Q8N7N1 296 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 CLDN22Q8N7P3 220 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 CPEB3Q8NE35 698 aaKnown RBP10.62□□□□□ -0.71
TRIM28-212ENST00000597995 OR1J1Q8NGS3 322 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 GEMIN6Q8WXD5 167 aaKnown RBP10.62□□□□□ -0.71
TRIM28-212ENST00000597995 TXNIPQ9H3M7 391 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF696Q9H7X3 374 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 ESM1Q9NQ30 184 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 DDX28Q9NUL7 540 aaKnown RBP10.62□□□□□ -0.71
TRIM28-212ENST00000597995 EGFL7Q9UHF1 273 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 OPN4Q9UHM6 478 aa10.62□□□□□ -0.71
TRIM28-212ENST00000597995 TRAV27A0A087WT01 109 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 GMNCA6NCL1 334 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 MCIDASD6RGH6 385 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CDC42EP2O14613 210 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 GSTA4O15217 222 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 KCNAB3O43448 404 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 IGHV1-46P01743 117 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 ADH4P08319 380 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 HKR1P10072 659 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CDAP32320 146 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 DAP3P51398 398 aaKnown RBP10.61□□□□□ -0.71
TRIM28-212ENST00000597995 MMP15P51511 669 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 TRAM2Q15035 370 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 TSTQ16762 297 aaKnown RBP10.61□□□□□ -0.71
TRIM28-212ENST00000597995 ZNF718Q3SXZ3 478 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 ALG10Q5BKT4 473 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 C10orf128Q5T292 105 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 SLC25A47Q6Q0C1 308 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 HDDC2Q7Z4H3 204 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 IGFN1Q86VF2 1251 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 RNF148Q8N7C7 305 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 ICA1LQ8NDH6 482 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 OR13C2Q8NGS9 318 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 OR51A7Q8NH64 312 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CCL17Q92583 94 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 DVL3Q92997 716 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-212ENST00000597995 NABP1Q96AH0 204 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CMTM5Q96DZ9 223 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 GAL3ST1Q99999 423 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 KCTD14Q9BQ13 255 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-212ENST00000597995 FNDC11Q9BVV2 318 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 KCNN2Q9H2S1 579 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 SIAEQ9HAT2 523 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CYSLTR2Q9NS75 346 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 EIF3KQ9UBQ5 218 aaKnown RBP10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CGGBP1Q9UFW8 167 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-212ENST00000597995 CACNG2Q9Y698 323 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 ARHGAP32A7KAX9 2087 aa10.61□□□□□ -0.71
TRIM28-212ENST00000597995 PLSCR5A0PG75 271 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 HTR3EA5X5Y0 456 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 TMPRSS2O15393 492 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 FOXH1O75593 365 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 UBOX5O94941 541 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 IGHMP01871 453 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 STOMP27105 288 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 GCH1P30793 250 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 CTXN1P60606 82 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 RPL27P61353 136 aaKnown RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 MRPS34P82930 218 aaKnown RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 HSF2Q03933 536 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 GLO1Q04760 184 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 TOP3AQ13472 1001 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 PABPC1L2AQ5JQF8 200 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 MBNL2Q5VZF2 373 aaKnown RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 GLYATQ6IB77 296 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 RBMS3Q6XE24 437 aaKnown RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 MBOAT2Q6ZWT7 520 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 FKBP9P1Q75LS8 142 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 PIGWQ7Z7B1 504 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 RNF113BQ8IZP6 322 aaKnown RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 FAM156AQ8NDB6 213 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 ACOT11Q8WXI4 607 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 GTF3AQ92664 365 aaKnown RBP10.6□□□□□ -0.71
TRIM28-212ENST00000597995 FAM162AQ96A26 154 aa10.6□□□□□ -0.71
TRIM28-212ENST00000597995 MARS2Q96GW9 593 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms