RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CYB5R1Q9UHQ9 305 aa12.89□□□□□ -0.35
VRK3-212ENST00000596814 LSM2Q9Y333 95 aaKnown RBP12.89□□□□□ -0.35
VRK3-212ENST00000596814 CAB39Q9Y376 341 aaPredicted RBP12.89□□□□□ -0.35
VRK3-212ENST00000596814 E9PLN8 166 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 MPGP29372 298 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 CA7P43166 264 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 RPL5P46777 297 aaKnown RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 FOXG1P55316 489 aaPredicted RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 SH3BGRP55822 239 aaPredicted RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 EIF2B1Q14232 305 aaKnown RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 ENDOGQ14249 297 aaKnown RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 NRN1LQ496H8 165 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ZNF322Q6U7Q0 402 aaPredicted RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 ZNF813Q6ZN06 617 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 SNX33Q8WV41 574 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ASB17Q8WXJ9 295 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 OR5M11Q96RB7 305 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 VKORC1Q9BQB6 163 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ZNF416Q9BWM5 594 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 PLSCR4Q9NRQ2 329 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ASH2LQ9UBL3 628 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 LHFPL6Q9Y693 200 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 HSPB2A8KAH6 182 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 INMTO95050 263 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 CGAP01215 116 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 CD8BP10966 210 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 PSMB9P28065 219 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ALDH3B2P48448 385 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ARF1P84077 181 aaKnown RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 SPHARQ15513 63 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 HSPB2Q16082 182 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 CDONQ4KMG0 1287 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 FAM27BQ5VT28 67 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 TMEM211Q6ICI0 200 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 CORO6Q6QEF8 472 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 KLHL24Q6TFL4 600 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 Q6ZT83 130 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 DCXRQ7Z4W1 244 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 LRRC18Q8N456 261 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 SLC22A24Q8N4F4 322 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 OR2AJ1Q8NGZ0 328 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 OR52N5Q8NH56 324 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 SPRYD4Q8WW59 207 aaPredicted RBP12.88□□□□□ -0.35
VRK3-212ENST00000596814 C4orf36Q96KX1 117 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 ABHD6Q9BV23 337 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 OSGIN2Q9Y236 505 aa12.88□□□□□ -0.35
VRK3-212ENST00000596814 POLEQ07864 2286 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 NCOA6Q14686 2063 aaPredicted RBP12.87□□□□□ -0.35
VRK3-212ENST00000596814 A0A0G2JNJ9 132 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 PRR32B1ATL7 298 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 FARS2O95363 451 aaKnown RBP12.87□□□□□ -0.35
VRK3-212ENST00000596814 IL18BPO95998 194 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 ITGA5P08648 1049 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 OR8G3PP0DMU2 310 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 OPRM1P35372 400 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 EGR3Q06889 387 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 AQP6Q13520 282 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 TP53I3Q53FA7 332 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 NCCRP1Q6ZVX7 275 aaPredicted RBP12.87□□□□□ -0.35
VRK3-212ENST00000596814 ZNF627Q7L945 461 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 SYS1Q8N2H4 156 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 ST7LQ8TDW4 575 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 GATAD2BQ8WXI9 593 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 DMRTA2Q96SC8 542 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 AMELYQ99218 206 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 OPN3Q9H1Y3 402 aaPredicted RBP12.87□□□□□ -0.35
VRK3-212ENST00000596814 C1orf198Q9H425 327 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 ISG20L2Q9H9L3 353 aaKnown RBP12.87□□□□□ -0.35
VRK3-212ENST00000596814 Q9UFV3 132 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 GDF2Q9UK05 429 aaPredicted RBP12.87□□□□□ -0.35
VRK3-212ENST00000596814 IKZF2Q9UKS7 526 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 MEMO1Q9Y316 297 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 CACNA1CQ13936 2221 aa12.87□□□□□ -0.35
VRK3-212ENST00000596814 J3QLW9 94 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 PSMD9O00233 223 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 MT-ND5P03915 603 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 KRT8P05787 483 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 CST2P09228 141 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 HSMCR30P0CW71 290 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 ZNF19P17023 458 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 OR12D2P58182 307 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 MRPL49Q13405 166 aaKnown RBP12.86□□□□□ -0.35
VRK3-212ENST00000596814 RAB39AQ14964 217 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 TIGD6Q17RP2 521 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 SYT6Q5T7P8 510 aaPredicted RBP12.86□□□□□ -0.35
VRK3-212ENST00000596814 KCTD18Q6PI47 426 aaPredicted RBP12.86□□□□□ -0.35
VRK3-212ENST00000596814 CFAP77Q6ZQR2 320 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 PLEKHG7Q6ZR37 379 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 FAM220AQ7Z4H9 259 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 ZNF485Q8NCK3 441 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 OR1K1Q8NGR3 316 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 MAP6Q96JE9 813 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 OR8B4Q96RC9 309 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 SH3GL3Q99963 347 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 GNG8Q9UK08 70 aa12.86□□□□□ -0.35
VRK3-212ENST00000596814 A0A096LPE4 126 aa12.85□□□□□ -0.35
VRK3-212ENST00000596814 A0A1W2PPZ6 126 aa12.85□□□□□ -0.35
VRK3-212ENST00000596814 MAGEB4O15481 346 aaPredicted RBP12.85□□□□□ -0.35
VRK3-212ENST00000596814 WNT11O96014 354 aa12.85□□□□□ -0.35
VRK3-212ENST00000596814 COX5AP20674 150 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms