RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ERVS71-1P61550 626 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.6□□□□□ -0.87
VRK3-210ENST00000596121 KCNMB1Q16558 191 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 MEP1BQ16820 701 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 GLB1L2Q8IW92 636 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 ZCCHC24Q8N2G6 241 aaKnown RBP9.6□□□□□ -0.87
VRK3-210ENST00000596121 SVOPLQ8N434 492 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 IQCF1Q8N6M8 205 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 CYB561A3Q8NBI2 242 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 OR52E2Q8NGJ4 325 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 SNX18Q96RF0 628 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 SMR3AQ99954 134 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 TSSK6Q9BXA6 273 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 MRPL37Q9BZE1 423 aaKnown RBP9.6□□□□□ -0.87
VRK3-210ENST00000596121 OR51B6Q9H340 312 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 GSX1Q9H4S2 264 aaPredicted RBP9.6□□□□□ -0.87
VRK3-210ENST00000596121 CCNB1IP1Q9NPC3 277 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 RPRD1BQ9NQG5 326 aaKnown RBP9.6□□□□□ -0.87
VRK3-210ENST00000596121 PDP1Q9P0J1 537 aaPredicted RBP9.6□□□□□ -0.87
VRK3-210ENST00000596121 MYEF2Q9P2K5 600 aaKnown RBP9.6□□□□□ -0.87
VRK3-210ENST00000596121 FZR1Q9UM11 496 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 TIMM10BQ9Y5J6 103 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 CSPG4Q6UVK1 2322 aa9.6□□□□□ -0.87
VRK3-210ENST00000596121 ARRDC5A6NEK1 342 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 B9A039 149 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 H7C417 338 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 GNGT2O14610 69 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 ENTPD5O75356 428 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 PSKH1P11801 424 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 STOMP27105 288 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 PYCR1P32322 319 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 GLRXP35754 106 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 HSF2Q03933 536 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 TNK1Q13470 666 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 SLC36A3Q495N2 470 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 CCDC92Q53HC0 331 aaPredicted RBP9.59□□□□□ -0.87
VRK3-210ENST00000596121 TMEM255AQ5JRV8 349 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 C1orf146Q5VVC0 180 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 LYPD4Q6UWN0 246 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.59□□□□□ -0.87
VRK3-210ENST00000596121 ZBTB46Q86UZ6 589 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 JAZF1Q86VZ6 243 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 ZNF101Q8IZC7 436 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 LNX2Q8N448 690 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 SLC37A3Q8NCC5 494 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 DUS3LQ96G46 650 aaKnown RBP9.59□□□□□ -0.87
VRK3-210ENST00000596121 SORCS2Q96PQ0 1159 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 NMNAT2Q9BZQ4 307 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 KCNN2Q9H2S1 579 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 MMADHCQ9H3L0 296 aaPredicted RBP9.59□□□□□ -0.87
VRK3-210ENST00000596121 TBC1D23Q9NUY8 699 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 FBXL3Q9UKT7 428 aa9.59□□□□□ -0.87
VRK3-210ENST00000596121 IQCMA0A1B0GVH7 501 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 C5orf49A4QMS7 147 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 C12orf71A8MTZ7 269 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 H7C1Q1 480 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 SSX4O60224 188 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 SNAP29O95721 258 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CLPTM1O96005 669 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 NGFP01138 241 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 GSTM3P21266 225 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CCNOP22674 350 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 NOS3P29474 1203 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 UCP2P55851 309 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 LSM6P62312 80 aaKnown RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 HIST1H3AP68431 136 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 PLP2Q04941 152 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 COX10Q12887 443 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CRMP1Q14194 572 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 GK3PQ14409 553 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 MAD2L1BPQ15013 274 aaPredicted RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 CLEC12BQ2HXU8 276 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 TBC1D28Q2M2D7 210 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 RSPO1Q2MKA7 263 aaPredicted RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 HIST2H3PS2Q5TEC6 136 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 ACSM5Q6NUN0 579 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 RPL13AP3Q6NVV1 102 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CORO6Q6QEF8 472 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CCDC121Q6ZUS5 278 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 HIST2H3AQ71DI3 136 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 VASH1Q7L8A9 365 aaPredicted RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 SYT9Q86SS6 491 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 SLC26A10Q8NG04 563 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 OR52L1Q8NGH7 329 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 OR51L1Q8NGJ5 315 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 OR9Q1Q8NGQ5 310 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 SLC7A6Q92536 515 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 MRPL24Q96A35 216 aaKnown RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 TRMT61AQ96FX7 289 aaKnown RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 SYT3Q9BQG1 590 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 RBM4Q9BWF3 364 aaKnown RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 HCAR1Q9BXC0 346 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 RACGAP1Q9H0H5 632 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CDH20Q9HBT6 801 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 MRPL22Q9NWU5 206 aaKnown RBP9.58□□□□□ -0.88
VRK3-210ENST00000596121 ASH2LQ9UBL3 628 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 CMAHPQ9Y471 501 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 LHFPL6Q9Y693 200 aa9.58□□□□□ -0.88
VRK3-210ENST00000596121 TLN2Q9Y4G6 2542 aa9.57□□□□□ -0.88
VRK3-210ENST00000596121 OR6C6A6NF89 314 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms