RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 C1orf21Q9H246 121 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 MS4A5Q9H3V2 200 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 MAGIXQ9H6Y5 334 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 VSX1Q9NZR4 365 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-206ENST00000579558 LYVE1Q9Y5Y7 322 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 ABCA1O95477 2261 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 LOC100509620A0A075B734 347 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 C5orf49A4QMS7 147 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 VWC2LB2RUY7 222 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 TNFRSF11BO00300 401 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 IMPA2O14732 288 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 CD5LO43866 347 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 KHDRBS3O75525 346 aaKnown RBP20.51■□□□□ 0.87
SHMT1-206ENST00000579558 APEHP13798 732 aaKnown RBP20.51■□□□□ 0.87
SHMT1-206ENST00000579558 USF1P22415 310 aaPredicted RBP20.51■□□□□ 0.87
SHMT1-206ENST00000579558 MAGEA2P43356 314 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 GSSP48637 474 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 ZNF774Q6NX45 483 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 C1orf94Q6P1W5 598 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 PGBD2Q6P3X8 592 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 SYT9Q86SS6 491 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 SYNPRQ8TBG9 265 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 C11orf40Q8WZ69 217 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 CCDC124Q96CT7 223 aaKnown RBP20.51■□□□□ 0.87
SHMT1-206ENST00000579558 CLPTM1LQ96KA5 538 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 EIF3KQ9UBQ5 218 aaKnown RBP20.51■□□□□ 0.87
SHMT1-206ENST00000579558 RTTNQ86VV8 2226 aa20.51■□□□□ 0.87
SHMT1-206ENST00000579558 CHD3Q12873 2000 aaKnown RBP20.51■□□□□ 0.87
SHMT1-206ENST00000579558 CLPTM1O96005 669 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 CDKN2AP42771 156 aaKnown RBP20.5■□□□□ 0.87
SHMT1-206ENST00000579558 NR4A2P43354 598 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 HMGA2P52926 109 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 KLF3P57682 345 aaPredicted RBP20.5■□□□□ 0.87
SHMT1-206ENST00000579558 TSPAN31Q12999 210 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 GGTLC2Q14390 218 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 TMEM249Q2WGJ8 235 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 OR1J1Q8NGS3 322 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 ASB9Q96DX5 294 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 SAMD8Q96LT4 415 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 LRGUKQ96M69 825 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 WACQ9BTA9 647 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 THTPAQ9BU02 230 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 IFT27Q9BW83 186 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 NUAK2Q9H093 628 aa20.5■□□□□ 0.87
SHMT1-206ENST00000579558 COA3Q9Y2R0 106 aaPredicted RBP20.5■□□□□ 0.87
SHMT1-206ENST00000579558 STAMBPO95630 424 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 ZNF250P15622 560 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 WNT5AP41221 380 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 SCRN3Q0VDG4 424 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 NKPD1Q17RQ9 610 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 ALKBH6Q3KRA9 238 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 FAM98BQ52LJ0 330 aaKnown RBP20.49■□□□□ 0.87
SHMT1-206ENST00000579558 ZNF620Q6ZNG0 422 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 JAZF1Q86VZ6 243 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 GLB1L2Q8IW92 636 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 LINC00471Q8N535 108 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 OR9Q2Q8NGE9 314 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 UBASH3BQ8TF42 649 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 POP5Q969H6 163 aaKnown RBP20.49■□□□□ 0.87
SHMT1-206ENST00000579558 TAAR3PQ9P1P4 343 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 GPR160Q9UJ42 338 aa20.49■□□□□ 0.87
SHMT1-206ENST00000579558 IGLV3-9A0A075B6K5 115 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 ARPC3O15145 178 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 TLX2O43763 284 aaPredicted RBP20.48■□□□□ 0.87
SHMT1-206ENST00000579558 UBOX5O94941 541 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 NAT2P11245 290 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 LEG1Q6P5S2 330 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 DNM1P34Q6PK57 102 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 UNQ6126/PRO20091Q6UXV3 157 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 ZNF101Q8IZC7 436 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 ZNF786Q8N393 782 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 ZNF540Q8NDQ6 660 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 OR4C15Q8NGM1 316 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 TRIM15Q9C019 465 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 BPESC1Q9GZL8 116 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 YAE1D1Q9NRH1 226 aa20.48■□□□□ 0.87
SHMT1-206ENST00000579558 DOK2O60496 412 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 CCNB2O95067 398 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 MPZL1O95297 269 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 RENP00797 406 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 NOS3P29474 1203 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 CRABP1P29762 137 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 CENPAP49450 140 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 AQP6Q13520 282 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 OTPQ5XKR4 325 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 TSSK2Q96PF2 358 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 BTBD10Q9BSF8 475 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 SLCO1C1Q9NYB5 712 aa20.47■□□□□ 0.87
SHMT1-206ENST00000579558 NDRG4Q9ULP0 352 aaKnown RBP20.47■□□□□ 0.87
SHMT1-206ENST00000579558 YLPM1P49750 1951 aaKnown RBP20.46■□□□□ 0.87
SHMT1-206ENST00000579558 SGCEO43556 437 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 HIST1H1CP16403 213 aaKnown RBP20.46■□□□□ 0.87
SHMT1-206ENST00000579558 HTR5AP47898 357 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 LSM6P62312 80 aaKnown RBP20.46■□□□□ 0.87
SHMT1-206ENST00000579558 PPP1R8Q12972 351 aaKnown RBP20.46■□□□□ 0.87
SHMT1-206ENST00000579558 SPATA46Q5T0L3 261 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 OR2T5Q6IEZ7 315 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 OR2T29Q8NH02 315 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 OR4K13Q8NH42 304 aa20.46■□□□□ 0.87
SHMT1-206ENST00000579558 ABHD4Q8TB40 342 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms