RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 HIF3AQ9Y2N7 669 aa13.11□□□□□ -0.31
VPS53-218ENST00000575207 A0A1B0GW55 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 H3BQF6 201 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 OR10H3O60404 316 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4L2P0CJ85 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4L3P0CJ86 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4L5P0CJ88 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4L6P0CJ89 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4L7P0CJ90 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 RPS4Y1P22090 263 aaKnown RBP13.1□□□□□ -0.31
VPS53-218ENST00000575207 CBLP22681 906 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 GDI2P50395 445 aaKnown RBP13.1□□□□□ -0.31
VPS53-218ENST00000575207 ACSM1Q08AH1 577 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 LRRC75BQ2VPJ9 315 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 LRFN4Q6PJG9 635 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4L9Q6RFH8 374 aaPredicted RBP13.1□□□□□ -0.31
VPS53-218ENST00000575207 CCDC121Q6ZUS5 278 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 NET1Q7Z628 596 aaPredicted RBP13.1□□□□□ -0.31
VPS53-218ENST00000575207 CCNYL1Q8N7R7 359 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 COQ8BQ96D53 544 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 SLC41A3Q96GZ6 507 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 OR5M11Q96RB7 305 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 SLC38A1Q9H2H9 487 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 TNFRSF12AQ9NP84 129 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 DUX4Q9UBX2 424 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 UBR4Q5T4S7 5183 aa13.1□□□□□ -0.31
VPS53-218ENST00000575207 A0A087WUJ7 227 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 A0A1W2PRD5 423 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 A0A1W2PRF3 423 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 A0A1W2PRM7 423 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 TCRBV4S1A1TA0A5B7 111 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 CDHR4A6H8M9 788 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 ECDO95905 644 aaPredicted RBP13.09□□□□□ -0.31
VPS53-218ENST00000575207 DBIP07108 87 aaKnown RBP13.09□□□□□ -0.31
VPS53-218ENST00000575207 NEFHP12036 1026 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 PMELP40967 661 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 GALNTL6Q49A17 601 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 IL23RQ5VWK5 629 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 BTN2A1Q7KYR7 527 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 CDCA4Q9BXL8 241 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 MMADHCQ9H3L0 296 aaPredicted RBP13.09□□□□□ -0.31
VPS53-218ENST00000575207 SIRT7Q9NRC8 400 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 TMCC3Q9ULS5 477 aa13.09□□□□□ -0.31
VPS53-218ENST00000575207 TMEM114B3SHH9 223 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 LSM1O15116 133 aaKnown RBP13.08□□□□□ -0.32
VPS53-218ENST00000575207 SERPINI2O75830 405 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 GSTM3P21266 225 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 ARHGDIAP52565 204 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 TAF11Q15544 211 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 ETV3LQ6ZN32 361 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 MOGAT3Q86VF5 341 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 LRRC18Q8N456 261 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 PNKDQ8N490 385 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 OR51G2Q8NGK0 314 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 FBXO25Q8TCJ0 367 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 TNFRSF14Q92956 283 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 SLC38A4Q969I6 547 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 TRNT1Q96Q11 434 aaKnown RBP13.08□□□□□ -0.32
VPS53-218ENST00000575207 DPH5Q9H2P9 285 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 MTHFD2LQ9H903 347 aaPredicted RBP13.08□□□□□ -0.32
VPS53-218ENST00000575207 TMEM216Q9P0N5 145 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 NDRG4Q9ULP0 352 aaKnown RBP13.08□□□□□ -0.32
VPS53-218ENST00000575207 SMAD5-AS1Q9Y6J3 95 aa13.08□□□□□ -0.32
VPS53-218ENST00000575207 SYNGR1O43759 233 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 FCN3O75636 299 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 IGF2P01344 180 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 PRG2P13727 222 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 SRP9P49458 86 aaKnown RBP13.07□□□□□ -0.32
VPS53-218ENST00000575207 BIDP55957 195 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 PRB3Q04118 309 aaPredicted RBP13.07□□□□□ -0.32
VPS53-218ENST00000575207 PUDPQ08623 228 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 PTGR1Q14914 329 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 C5orf46Q6UWT4 87 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 ZCCHC23Q6ZST2 131 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 CLECL1Q8IZS7 167 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 ANKFN1Q8N957 763 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 ATG16L2Q8NAA4 619 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 C19orf18Q8NEA5 215 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 PIFOQ8TCI5 191 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 C17orf50Q8WW18 174 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 RORBQ92753 470 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 MYDGFQ969H8 173 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 DMRTB1Q96MA1 342 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 DUSP26Q9BV47 211 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 PRSS22Q9GZN4 317 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 ELOVL3Q9HB03 270 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 SNX12Q9UMY4 172 aa13.07□□□□□ -0.32
VPS53-218ENST00000575207 TUBG1P23258 451 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 MYF6P23409 242 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 RGS6P49758 472 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 UBE2E1P51965 193 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 SYPL1Q16563 259 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 PXKQ7Z7A4 578 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 KRTCAP2Q8N6L1 136 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 LY6G5BQ8NDX9 201 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 OR10AD1Q8NGE0 317 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 AJUBAQ96IF1 538 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 CCNB1IP1Q9NPC3 277 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 TUBG2Q9NRH3 451 aa13.06□□□□□ -0.32
VPS53-218ENST00000575207 TRAV36DV7A0A075B6V5 113 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 241.7 ms