RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CRMP1Q14194 572 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 SNAPC1Q16533 368 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 SGCAQ16586 387 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 NCMAPQ5T1S8 102 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 IQCF1Q8N6M8 205 aa17.93■□□□□ 0.46
VPS53-210ENST00000571456 SRA1Q9HD15 236 aaKnown RBP17.93■□□□□ 0.46
VPS53-210ENST00000571456 COA3Q9Y2R0 106 aaPredicted RBP17.93■□□□□ 0.46
VPS53-210ENST00000571456 MITFO75030 526 aaPredicted RBP17.92■□□□□ 0.46
VPS53-210ENST00000571456 SEC14L2O76054 403 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 LY6G6DO95868 133 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 CD3EP07766 207 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 PCSK6P29122 969 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 CDC42P60953 191 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 RAB1AP62820 205 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 PLP2Q04941 152 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 SLC34A1Q06495 639 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 SCRN3Q0VDG4 424 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 FBXW10Q5XX13 1052 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 C12orf73Q69YU5 71 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 CDC20BQ86Y33 519 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 DEPDC4Q8N2C3 294 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 PROKR2Q8NFJ6 384 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 TRUB1Q8WWH5 349 aaKnown RBP17.92■□□□□ 0.46
VPS53-210ENST00000571456 RIBC2Q9H4K1 309 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 RERGLQ9H628 205 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 RNPEPL1Q9HAU8 725 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 CCNB1IP1Q9NPC3 277 aa17.92■□□□□ 0.46
VPS53-210ENST00000571456 CADP27708 2225 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 CD79AP11912 226 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 AQP6Q13520 282 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 DEFB113Q30KQ7 82 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 SLC35D3Q5M8T2 416 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 PAMR1Q6UXH9 720 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 ALDH16A1Q8IZ83 802 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 CYB561A3Q8NBI2 242 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 OR10H5Q8NGA6 315 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 PLPPR2Q96GM1 343 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 HRASLS5Q96KN8 279 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 KCNS3Q9BQ31 491 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 GRIP2Q9C0E4 1043 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 RNF121Q9H920 327 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 SMPD3Q9NY59 655 aaPredicted RBP17.91■□□□□ 0.46
VPS53-210ENST00000571456 TVP23BQ9NYZ1 205 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 ZNF224Q9NZL3 707 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 TIMM10BQ9Y5J6 103 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 ARID1AO14497 2285 aa17.91■□□□□ 0.46
VPS53-210ENST00000571456 TMCC2O75069 709 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 HLA-HP01893 362 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 CRYAAP02489 173 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 RAF1P04049 648 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 GAAP10253 952 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 SPI1P17947 270 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 CD40P25942 277 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 FMO3P31513 532 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 CDAP32320 146 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 ZNF83P51522 516 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 ETFDHQ16134 617 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 OGFRL1Q5TC84 451 aaPredicted RBP17.9■□□□□ 0.46
VPS53-210ENST00000571456 MDP1Q86V88 176 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 SLC26A10Q8NG04 563 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 OR8J1Q8NGP2 316 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 PIK3IP1Q96FE7 263 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 TSSK2Q96PF2 358 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 SLC29A1Q99808 456 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 SH3GL3Q99963 347 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 TMEM204Q9BSN7 226 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 VCX3BQ9H321 246 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 NPAP1Q9NZP6 1156 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 ATPIF1Q9UII2 106 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 RNF115Q9Y4L5 304 aa17.9■□□□□ 0.46
VPS53-210ENST00000571456 IQCMA0A1B0GVH7 501 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 A0A1W2PR80 420 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 M0R1B8 84 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 DCTN6O00399 190 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 SERPINA5P05154 406 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 MMP7P09237 267 aaPredicted RBP17.89■□□□□ 0.45
VPS53-210ENST00000571456 ZNF823P16415 610 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 BSPH1Q075Z2 132 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 TMEM236Q5W0B7 351 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 ALKBH2Q6NS38 261 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 ADAM5Q6NVV9 412 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 LRRC18Q8N456 261 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 OR1J2Q8NGS2 313 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 TMEM163Q8TC26 289 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 IPCEF1Q8WWN9 437 aaPredicted RBP17.89■□□□□ 0.45
VPS53-210ENST00000571456 ZNF416Q9BWM5 594 aa17.89■□□□□ 0.45
VPS53-210ENST00000571456 DPRXA6NFQ7 191 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 MPZL2O60487 215 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 GLCEO94923 617 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 ATE1O95260 518 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 HLA-DQA2P01906 255 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 COX5BP10606 129 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 EFNB1P98172 346 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 TEKQ02763 1124 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 LCN1P1Q5VSP4 162 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 NXNL2Q5VZ03 156 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 GJC3Q8NFK1 279 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 C11orf40Q8WZ69 217 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 PTP4A1Q93096 173 aa17.88■□□□□ 0.45
VPS53-210ENST00000571456 H2AFY2Q9P0M6 372 aaPredicted RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms