RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TMEM236Q5W0B7 351 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 FAM166AQ6J272 317 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 DPY19L2P2Q6ZN68 376 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 SLC16A14Q7RTX9 510 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 OR52E2Q8NGJ4 325 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 OR9Q1Q8NGQ5 310 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 GIPC3Q8TF64 312 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 C1orf159Q96HA4 380 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 ALG12Q9BV10 488 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 TSSK6Q9BXA6 273 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 NUAK2Q9H093 628 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 MED20Q9H944 212 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 SMURF2Q9HAU4 748 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 TBC1D23Q9NUY8 699 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 CDH10Q9Y6N8 788 aa11.98□□□□□ -0.49
CLN3-235ENST00000568497 OR6C68A6NDL8 312 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 M0R129 80 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 EBAG9O00559 213 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 XKRYO14609 159 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 MGRN1O60291 552 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 GYPBP06028 91 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 FAM157BP0CG42 384 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 OR8G3PP0DMU2 310 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 IGHV4-31P0DP07 118 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 ZNF14P17017 642 aaPredicted RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 PTAFRP25105 342 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 APEX1P27695 318 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 SDHAP31040 664 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 SLC6A6P31641 620 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 THBS4P35443 961 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 RPS27P42677 84 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 FABP6P51161 128 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 ZNF84P51523 738 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 HNRNPA0Q13151 305 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 ENDOGQ14249 297 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 SLC36A3Q495N2 470 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 CORO6Q6QEF8 472 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 ZCCHC24Q8N2G6 241 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 CPEB3Q8NE35 698 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 OR10H5Q8NGA6 315 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 C11orf40Q8WZ69 217 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 SLC7A6Q92536 515 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 RBP7Q96R05 134 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 GPX7Q96SL4 187 aaPredicted RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 ZNF416Q9BWM5 594 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 GRIP2Q9C0E4 1043 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 KRCC1Q9NPI7 259 aaPredicted RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 RPRD1BQ9NQG5 326 aaKnown RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 CRNNQ9UBG3 495 aaPredicted RBP11.97□□□□□ -0.49
CLN3-235ENST00000568497 REV1Q9UBZ9 1251 aa11.97□□□□□ -0.49
CLN3-235ENST00000568497 ARFGEF3Q5TH69 2177 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 TVP23AA6NH52 213 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 A6NIZ1 184 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 SAC3D1A6NKF1 404 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 BHLHE40O14503 412 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 CIB2O75838 187 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 RAB36O95755 333 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 IGKV3-15P01624 115 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 MMP7P09237 267 aaPredicted RBP11.96□□□□□ -0.49
CLN3-235ENST00000568497 SLC25A16P16260 332 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 CCNOP22674 350 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 NOS3P29474 1203 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 RBMXP38159 391 aaKnown RBP11.96□□□□□ -0.49
CLN3-235ENST00000568497 IFNGR2P38484 337 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 RASSF2P50749 326 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 ZNF133P52736 654 aaPredicted RBP11.96□□□□□ -0.49
CLN3-235ENST00000568497 DSCR9P59020 149 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 RAP1BP61224 184 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 RAP1AP62834 184 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLN3-235ENST00000568497 ALKBH6Q3KRA9 238 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 PABPC1L2AQ5JQF8 200 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 ZNF774Q6NX45 483 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 LRP11Q86VZ4 500 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 OR6V1Q8N148 313 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 RFLNBQ8N5W9 214 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 C3orf56Q8N813 242 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 PAPD5Q8NDF8 572 aaKnown RBP11.96□□□□□ -0.49
CLN3-235ENST00000568497 ICA1LQ8NDH6 482 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 USB1Q9BQ65 265 aaKnown RBP11.96□□□□□ -0.49
CLN3-235ENST00000568497 TRAF4Q9BUZ4 470 aaPredicted RBP11.96□□□□□ -0.49
CLN3-235ENST00000568497 HCAR1Q9BXC0 346 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 WNT5BQ9H1J7 359 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 POLE4Q9NR33 117 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 FAIMQ9NVQ4 179 aa11.96□□□□□ -0.49
CLN3-235ENST00000568497 LOC100289279A0A1B0GTE1 492 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 HTR3EA5X5Y0 456 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 NPIPB13A6NJU9 1138 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 FAM183AA6NL82 134 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 NPIPB4C9JG80 1138 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 GZMKP49863 264 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 DAPP51397 102 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 RPS6KA3P51812 740 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 PSG4Q00888 419 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 SNTB2Q13425 540 aaKnown RBP11.95□□□□□ -0.5
CLN3-235ENST00000568497 MST1LQ2TV78 715 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 ZNF362Q5T0B9 420 aaPredicted RBP11.95□□□□□ -0.5
CLN3-235ENST00000568497 THEM4Q5T1C6 240 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 ACSM5Q6NUN0 579 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 RASSF6Q6ZTQ3 369 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms