RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SAMHD1Q9Y3Z3 626 aaKnown RBP1.18□□□□□ -2.22
VPS35-207ENST00000568191 TRAV6A0A075B6T7 132 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 A0A1B0GW55 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 A0A1W2PPE3 182 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 H0YCG3 227 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 LGALS9O00182 355 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 NDC80O14777 642 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 MRPS12O15235 138 aaKnown RBP1.17□□□□□ -2.22
VPS35-207ENST00000568191 MAGEB3O15480 346 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DPM1O60762 260 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 RHOBTB1O94844 696 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 UBTFL6P0CB48 400 aaPredicted RBP1.17□□□□□ -2.22
VPS35-207ENST00000568191 DUX4L2P0CJ85 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DUX4L3P0CJ86 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DUX4L5P0CJ88 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DUX4L6P0CJ89 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DUX4L7P0CJ90 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 CD99P14209 185 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DTYMKP23919 212 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 CASP14P31944 242 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 PEX19P40855 299 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 CXCL12P48061 93 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 IFNAR2P48551 515 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 RND2P52198 227 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 FBXW4P57775 412 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 EXOC3L2Q2M3D2 409 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 KRTAP6-3Q3LI67 103 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 KCTD21Q4G0X4 260 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 CFAP157Q5JU67 520 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 THEM4Q5T1C6 240 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 SLC25A48Q6ZT89 311 aaKnown RBP1.17□□□□□ -2.22
VPS35-207ENST00000568191 TMEM135Q86UB9 458 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 OAFQ86UD1 273 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 APCDD1LQ8NCL9 501 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 OR4F6Q8NGB9 312 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 OR52M1Q8NGK5 317 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 OR1S2Q8NGQ3 325 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 C15orf40Q8WUR7 153 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 NPY6RQ99463 290 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 TBL1YQ9BQ87 522 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 ANP32EQ9BTT0 268 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 ROPN1BQ9BZX4 212 aaPredicted RBP1.17□□□□□ -2.22
VPS35-207ENST00000568191 NIPAL2Q9H841 368 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 SLC38A10Q9HBR0 1119 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 FBXO6Q9NRD1 293 aaPredicted RBP1.17□□□□□ -2.22
VPS35-207ENST00000568191 DCAF16Q9NXF7 216 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 KLHL28Q9NXS3 571 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 DUX4Q9UBX2 424 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 LTBP4Q8N2S1 1624 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 ZNF407Q9C0G0 2248 aa1.17□□□□□ -2.22
VPS35-207ENST00000568191 ADAMTS13Q76LX8 1427 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 DENND4AQ7Z401 1863 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 CACNA1DQ01668 2161 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 SYNJ2BP-COX16A0A087WUM0 186 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 A0A0U1RQV1 116 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 ZNF816-ZNF321PA0A0X1KG74 233 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 J3QRE1 110 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 MPHOSPH10O00566 681 aaKnown RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 BPY2O14599 106 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 GMFGO60234 142 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 NOL3O60936 208 aaKnown RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 ERLIN2O94905 339 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 YIF1AO95070 293 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 TMEM50AO95807 157 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 TSPAN12O95859 305 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 IGLV6-57P01721 117 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 VHLP40337 213 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 YAP1P46937 504 aaKnown RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 TPMTP51580 245 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 AIF1P55008 147 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 GPX6P59796 221 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 RPS11P62280 158 aaKnown RBP eCLIP1.16□□□□□ -2.22
VPS35-207ENST00000568191 HMGN5P82970 282 aaKnown RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 TAF7Q15545 349 aaPredicted RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 ANKDD1AQ495B1 522 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 ATAD3BQ5T9A4 648 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 TEX43Q6ZNM6 134 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 NIPA1Q7RTP0 329 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 LRRC75A-AS1Q8N1F1 130 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 MS4A15Q8N5U1 240 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 OTUD6BQ8N6M0 293 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 FAM83FQ8NEG4 500 aaPredicted RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 OR4K5Q8NGD3 323 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 OR10R2Q8NGX6 335 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 ZNF606Q8WXB4 792 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 SLC41A3Q96GZ6 507 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 ZNF488Q96MN9 340 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 MFFQ9GZY8 342 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 LHX5Q9H2C1 402 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 VCX2Q9H322 139 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 DHX35Q9H5Z1 703 aaKnown RBP1.16□□□□□ -2.22
VPS35-207ENST00000568191 SGK2Q9HBY8 427 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 UVRAGQ9P2Y5 699 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 ZNF639Q9UID6 485 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 IKBKGQ9Y6K9 419 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 PCNX2A6NKB5 2137 aa1.16□□□□□ -2.22
VPS35-207ENST00000568191 CENPVL3A0A0U1RRI6 287 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 VGLL3A8MV65 326 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 J3QKU1 62 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 L7N2F9 121 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms