RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 CLDN22Q8N7P3 220 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 C3orf56Q8N813 242 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 ABHD4Q8TB40 342 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 NANPQ8TBE9 248 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 ZMYND19Q96E35 227 aaPredicted RBP12.65□□□□□ -0.38
CLN3-228ENST00000567804 SLC6A7Q99884 636 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 OR2H1Q9GZK4 316 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 EGLN1Q9GZT9 426 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 WNT5BQ9H1J7 359 aa12.65□□□□□ -0.38
CLN3-228ENST00000567804 CGGBP1Q9UFW8 167 aaPredicted RBP12.65□□□□□ -0.38
CLN3-228ENST00000567804 ISPDA4D126 451 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 SPRY1O43609 319 aaPredicted RBP12.64□□□□□ -0.39
CLN3-228ENST00000567804 NGFP01138 241 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 FSHBP01225 129 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 IFNA14P01570 189 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 CD55P08174 381 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 CST2P09228 141 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 IFI30P13284 250 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 LIPAP38571 399 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 RPL27P61353 136 aaKnown RBP12.64□□□□□ -0.39
CLN3-228ENST00000567804 PPP1CBP62140 327 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 SLC3A1Q07837 685 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 CYBRD1Q53TN4 286 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 SPRNQ5BIV9 151 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 COQ5Q5HYK3 327 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 ALDH16A1Q8IZ83 802 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 BPIFB2Q8N4F0 458 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 FNDC8Q8TC99 324 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 GEMIN6Q8WXD5 167 aaKnown RBP12.64□□□□□ -0.39
CLN3-228ENST00000567804 RCN3Q96D15 328 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 ZNF583Q96ND8 569 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 RBP7Q96R05 134 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 C7orf69Q9H7B7 122 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 OPN4Q9UHM6 478 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 KLHL21Q9UJP4 597 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 ZDHHC8Q9ULC8 765 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 A4GNTQ9UNA3 340 aa12.64□□□□□ -0.39
CLN3-228ENST00000567804 HTR3EA5X5Y0 456 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 BBIP1A8MTZ0 92 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 SLC22A2O15244 555 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 SNX3O60493 162 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 NPPAP01160 153 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 CTXN1P60606 82 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 LCN2P80188 198 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 ST3GAL3Q11203 375 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 MAPRE2Q15555 327 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 LRRC23Q53EV4 343 aaPredicted RBP12.63□□□□□ -0.39
CLN3-228ENST00000567804 FAM205BPQ63HN1 556 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 ZNF774Q6NX45 483 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 ZNF771Q7L3S4 317 aaPredicted RBP12.63□□□□□ -0.39
CLN3-228ENST00000567804 IGFN1Q86VF2 1251 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 ZDHHC22Q8N966 263 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 LRRC75AQ8NAA5 344 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 BPIFA2Q96DR5 249 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 PRRC1Q96M27 445 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 DIRC2Q96SL1 478 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 MYLK2Q9H1R3 596 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 ELOVL3Q9HB03 270 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 MSL2Q9HCI7 577 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 ESM1Q9NQ30 184 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 MRGBPQ9NV56 204 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 UBAP1Q9NZ09 502 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 TIMM10BQ9Y5J6 103 aa12.63□□□□□ -0.39
CLN3-228ENST00000567804 A0A1W2PPL8 197 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 FAM220BPB1ANY3 271 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 CCDC22O60826 627 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 PRSS23O95084 383 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 COX4I1P13073 169 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 EGR1P18146 543 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 KDELR2P33947 212 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 ARHGDIAP52565 204 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 PCBD1P61457 104 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 ENDOGQ14249 297 aaKnown RBP12.62□□□□□ -0.39
CLN3-228ENST00000567804 ZMAT1Q5H9K5 638 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 MTX3Q5HYI7 312 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 SYT9Q86SS6 491 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 ST7LQ8TDW4 575 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 TPD52L3Q96J77 140 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 C4orf45Q96LM5 186 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 DCAF16Q9NXF7 216 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 GMPR2Q9P2T1 348 aaKnown RBP12.62□□□□□ -0.39
CLN3-228ENST00000567804 NPTNQ9Y639 398 aa12.62□□□□□ -0.39
CLN3-228ENST00000567804 DOCK11Q5JSL3 2073 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 PPIAL4EA0A075B759 164 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 TRAV27A0A087WT01 109 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 PPIAL4CA0A0B4J2A2 164 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 A6NIZ1 184 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 PPIAL4DF5H284 164 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 TIMM8AO60220 97 aaPredicted RBP12.61□□□□□ -0.39
CLN3-228ENST00000567804 FOXH1O75593 365 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 IGHV2-70P01814 119 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 PPIAL4FP0DN26 164 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 MSR1P21757 451 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 FUT4P22083 530 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 ZFP36P26651 326 aaKnown RBP12.61□□□□□ -0.39
CLN3-228ENST00000567804 GUCA1AP43080 201 aaPredicted RBP12.61□□□□□ -0.39
CLN3-228ENST00000567804 RAP1BP61224 184 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 RAP1AP62834 184 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 SELENOWP63302 87 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 TNFAIP6P98066 277 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms