RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SPRY3O43610 288 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 PLPP2O43688 288 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 DEAF1O75398 565 aaPredicted RBP15.91■□□□□ 0.14
CLN3-218ENST00000565688 VENTXO95231 258 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 IGHV2-5P01817 119 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 ADH4P08319 380 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 MAKP20794 623 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 MSR1P21757 451 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 MPV17P39210 176 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 PPP1CBP62140 327 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 PRKCDQ05655 676 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 USP43Q70EL4 1123 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 NRMQ8IXM6 262 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.91■□□□□ 0.14
CLN3-218ENST00000565688 LRRC75AQ8NAA5 344 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 SEMA6DQ8NFY4 1073 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 OR51A7Q8NH64 312 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 CCL17Q92583 94 aa15.91■□□□□ 0.14
CLN3-218ENST00000565688 TRAV27A0A087WT01 109 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 A0A1W2PPL8 197 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 SASH3O75995 380 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 GATA3P23771 443 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 C12orf54Q6X4T0 127 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 RFPL4BQ6ZWI9 263 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 ZER1Q7Z7L7 766 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 PEG10Q86TG7 708 aaKnown RBP15.9■□□□□ 0.14
CLN3-218ENST00000565688 IGFN1Q86VF2 1251 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 CLDN22Q8N7P3 220 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 FAM156AQ8NDB6 213 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 GEMIN6Q8WXD5 167 aaKnown RBP15.9■□□□□ 0.14
CLN3-218ENST00000565688 ACOT11Q8WXI4 607 aaPredicted RBP15.9■□□□□ 0.14
CLN3-218ENST00000565688 C4orf45Q96LM5 186 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 NDEL1Q9GZM8 345 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 MAN2C1Q9NTJ4 1040 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 NDRG4Q9ULP0 352 aaKnown RBP15.9■□□□□ 0.14
CLN3-218ENST00000565688 CACNG2Q9Y698 323 aa15.9■□□□□ 0.14
CLN3-218ENST00000565688 ZSCAN5BA6NJL1 495 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 AHCYL1O43865 530 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 UBOX5O94941 541 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 COX5BP10606 129 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 EPHA1P21709 976 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 TUBG1P23258 451 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 YAP1P46937 504 aaKnown RBP15.89■□□□□ 0.13
CLN3-218ENST00000565688 FHL1Q13642 323 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 ENDOGQ14249 297 aaKnown RBP15.89■□□□□ 0.13
CLN3-218ENST00000565688 CGB2Q6NT52 195 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 ZNF774Q6NX45 483 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 THSD4Q6ZMP0 1018 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 ZNF730Q6ZMV8 503 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 C1orf229Q6ZS94 237 aaPredicted RBP15.89■□□□□ 0.13
CLN3-218ENST00000565688 C1QL2Q7Z5L3 287 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 VTCN1Q7Z7D3 282 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 RP9Q8TA86 221 aaKnown RBP15.89■□□□□ 0.13
CLN3-218ENST00000565688 RCN3Q96D15 328 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 JMJD8Q96S16 334 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 GAL3ST1Q99999 423 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 POLE4Q9NR33 117 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 TUBG2Q9NRH3 451 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 CMTM6Q9NX76 183 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 RHCGQ9UBD6 479 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 GRHPRQ9UBQ7 328 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 KLHL21Q9UJP4 597 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 PCDHB10Q9UN67 800 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 SNX13Q9Y5W8 968 aa15.89■□□□□ 0.13
CLN3-218ENST00000565688 LOC105371242A0A075B767 164 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 FFAR1O14842 300 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 GSTA4O15217 222 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 ZNF682O95780 498 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 NGFP01138 241 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 CD55P08174 381 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 GSTM3P21266 225 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 RPL4P36578 427 aaKnown RBP15.88■□□□□ 0.13
CLN3-218ENST00000565688 SF3A3Q12874 501 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLN3-218ENST00000565688 IFI44LQ53G44 452 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 TMEM255AQ5JRV8 349 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 DCAF12L2Q5VW00 463 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 MBOAT2Q6ZWT7 520 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 TREML1Q86YW5 311 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 NPEPL1Q8NDH3 523 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 OR13C2Q8NGS9 318 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 TMPRSS13Q9BYE2 586 aa15.88■□□□□ 0.13
CLN3-218ENST00000565688 J3KTA2 159 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 CXCR6O00574 342 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 XKRYO14609 159 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 TIMM8AO60220 97 aaPredicted RBP15.87■□□□□ 0.13
CLN3-218ENST00000565688 ABHD16AO95870 558 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 CD14P08571 375 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 FUT4P22083 530 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 HILS1P60008 231 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 LIPEQ05469 1076 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 SCRN3Q0VDG4 424 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 MTX3Q5HYI7 312 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 TMPRSS11FQ6ZWK6 438 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 FKBP9P1Q75LS8 142 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 RRM2BQ7LG56 351 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 SLC15A3Q8IY34 581 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 NANPQ8TBE9 248 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 HOPXQ9BPY8 73 aaPredicted RBP15.87■□□□□ 0.13
CLN3-218ENST00000565688 ANKRD19PQ9H560 264 aa15.87■□□□□ 0.13
CLN3-218ENST00000565688 TBCCD1Q9NVR7 557 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms