RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CYP2R1Q6VVX0 501 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 PTCHD4Q6ZW05 846 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 HIPK1Q86Z02 1210 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 ICA1LQ8NDH6 482 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 ZNF540Q8NDQ6 660 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 OR1J1Q8NGS3 322 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 SYNPRQ8TBG9 265 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 C11orf40Q8WZ69 217 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 MCUR1Q96AQ8 359 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 BCL2L14Q9BZR8 327 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 TAAR3PQ9P1P4 343 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 IER3IP1Q9Y5U9 82 aa15.74■□□□□ 0.11
CLN3-214ENST00000565140 LRP5LA4QPB2 252 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 T-ENOLP0DO92 83 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 ATP6V1B2P21281 511 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 COL8A2P25067 703 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 RRM2P31350 389 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 CDKN2AP42771 156 aaKnown RBP15.73■□□□□ 0.11
CLN3-214ENST00000565140 GDI2P50395 445 aaKnown RBP15.73■□□□□ 0.11
CLN3-214ENST00000565140 KLF3P57682 345 aaPredicted RBP15.73■□□□□ 0.11
CLN3-214ENST00000565140 GPR139Q6DWJ6 353 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 SMARCD3Q6STE5 483 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 DPY19L2P2Q6ZN68 376 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 RINLQ6ZS11 566 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 ZDHHC21Q8IVQ6 265 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 NDEL1Q9GZM8 345 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 SYT4Q9H2B2 425 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 KRCC1Q9NPI7 259 aaPredicted RBP15.73■□□□□ 0.11
CLN3-214ENST00000565140 VSX1Q9NZR4 365 aaPredicted RBP15.73■□□□□ 0.11
CLN3-214ENST00000565140 ACTR3BQ9P1U1 418 aa15.73■□□□□ 0.11
CLN3-214ENST00000565140 C12orf71A8MTZ7 269 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 SLC16A7O60669 478 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 LILRA1O75019 489 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 NCR1O76036 304 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 MPZL1O95297 269 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 TXNDC12O95881 172 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 APEHP13798 732 aaKnown RBP15.72■□□□□ 0.11
CLN3-214ENST00000565140 ZNF16P17020 682 aaPredicted RBP15.72■□□□□ 0.11
CLN3-214ENST00000565140 ZNF23P17027 643 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 PCBD1P61457 104 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 TRIP10Q15642 601 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 NKPD1Q17RQ9 610 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 TMEM255AQ5JRV8 349 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 SYT9Q86SS6 491 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 ALDH16A1Q8IZ83 802 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 CCDC197Q8NCU1 140 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 GTF3AQ92664 365 aaKnown RBP15.72■□□□□ 0.11
CLN3-214ENST00000565140 MSI2Q96DH6 328 aaKnown RBP15.72■□□□□ 0.11
CLN3-214ENST00000565140 SOX7Q9BT81 388 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 RERGLQ9H628 205 aa15.72■□□□□ 0.11
CLN3-214ENST00000565140 COA3Q9Y2R0 106 aaPredicted RBP15.72■□□□□ 0.11
CLN3-214ENST00000565140 OR10H3O60404 316 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 PPP1R3DO95685 299 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 NGFP01138 241 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 TACSTD2P09758 323 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 IL2RGP31785 369 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 MAGEB1P43366 347 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 SELENOVP59797 346 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 DBPQ10586 325 aaPredicted RBP15.71■□□□□ 0.11
CLN3-214ENST00000565140 RFX4Q33E94 735 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 SPATA46Q5T0L3 261 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 FANK1Q8TC84 345 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 YIPF5Q969M3 257 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 MARS2Q96GW9 593 aaKnown RBP15.71■□□□□ 0.11
CLN3-214ENST00000565140 TSSK2Q96PF2 358 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 NUAK2Q9H093 628 aa15.71■□□□□ 0.11
CLN3-214ENST00000565140 HINT3Q9NQE9 182 aaKnown RBP15.71■□□□□ 0.11
CLN3-214ENST00000565140 EIF3KQ9UBQ5 218 aaKnown RBP15.71■□□□□ 0.11
CLN3-214ENST00000565140 TCRBV5S2A0A599 114 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 C17orf100A8MU93 164 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 DCTN6O00399 190 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 KHDRBS3O75525 346 aaKnown RBP15.7■□□□□ 0.1
CLN3-214ENST00000565140 GPANK1O95872 356 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 IGHV3-13P01766 116 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 FPR3P25089 353 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 MPV17P39210 176 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 GSSP48637 474 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 GZMKP49863 264 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 RPS6KA3P51812 740 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 MS4A2Q01362 244 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 GLO1Q04760 184 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 C1orf94Q6P1W5 598 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 RFPL4BQ6ZWI9 263 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 ADCK1Q86TW2 530 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 SLC25A40Q8TBP6 338 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 RDH5Q92781 318 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 SAMD8Q96LT4 415 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 ERMAPQ96PL5 475 aaPredicted RBP15.7■□□□□ 0.1
CLN3-214ENST00000565140 OR2J1Q9GZK6 312 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 OR52D1Q9H346 318 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 SLCO1C1Q9NYB5 712 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 FAM53CQ9NYF3 392 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 TMCC3Q9ULS5 477 aa15.7■□□□□ 0.1
CLN3-214ENST00000565140 ICMTO60725 284 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 CALB2P22676 271 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 HMGA2P52926 109 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 PPP1CBP62140 327 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 ZNF718Q3SXZ3 478 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 PGBD2Q6P3X8 592 aa15.69■□□□□ 0.1
CLN3-214ENST00000565140 VASH1Q7L8A9 365 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms