RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TRIM36Q9NQ86 728 aa11.28□□□□□ -0.6
CLK3-214ENST00000564096 GALNT8Q9NY28 637 aa11.28□□□□□ -0.6
CLK3-214ENST00000564096 ASH2LQ9UBL3 628 aa11.28□□□□□ -0.6
CLK3-214ENST00000564096 CAB39Q9Y376 341 aaPredicted RBP11.28□□□□□ -0.6
CLK3-214ENST00000564096 USP24Q9UPU5 2620 aa11.28□□□□□ -0.6
CLK3-214ENST00000564096 CHD6Q8TD26 2715 aa11.28□□□□□ -0.6
CLK3-214ENST00000564096 PIEZO2Q9H5I5 2752 aa11.28□□□□□ -0.6
CLK3-214ENST00000564096 ATMQ13315 3056 aa11.27□□□□□ -0.6
CLK3-214ENST00000564096 A0A0G2JNJ9 132 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 A0A1B0GUH1 482 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 EEF1E1-BLOC1S5C9J1V9 151 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 CCL21O00585 134 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 MSTNO14793 375 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 EEF1E1O43324 174 aaKnown RBP11.27□□□□□ -0.61
CLK3-214ENST00000564096 SEC14L2O76054 403 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 MPZL1O95297 269 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 LIMS3P0CW19 117 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 LIMS4P0CW20 117 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 COX5AP20674 150 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 BMP5P22003 454 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 ETV1P50549 477 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 TAS2R43P59537 309 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 ARF1P84077 181 aaKnown RBP11.27□□□□□ -0.61
CLK3-214ENST00000564096 TLE1Q04724 770 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 MED22Q15528 200 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 ZNF544Q6NX49 715 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 ANKRD16Q6P6B7 361 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 DCXRQ7Z4W1 244 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 KCTD20Q7Z5Y7 419 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 BTLAQ7Z6A9 289 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 MRGPRGQ86SM5 289 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 SYT9Q86SS6 491 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 EGFL6Q8IUX8 553 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 CCDC36Q8IYA8 594 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 C17orf78Q8N4C9 275 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 GJC3Q8NFK1 279 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 OR1K1Q8NGR3 316 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 THEM6Q8WUY1 208 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 ZNF416Q9BWM5 594 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 MROQ9BYG7 248 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 COQ3Q9NZJ6 369 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 Q9UFV3 132 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 CYB5R1Q9UHQ9 305 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 GDF2Q9UK05 429 aaPredicted RBP11.27□□□□□ -0.61
CLK3-214ENST00000564096 IKZF2Q9UKS7 526 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 ZZEF1O43149 2961 aa11.27□□□□□ -0.61
CLK3-214ENST00000564096 CIB4A0PJX0 185 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 ZNF878C9JN71 531 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 SULT1C4O75897 302 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 UBL3O95164 117 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 CGAP01215 116 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 PTHP01270 115 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 ITGA5P08648 1049 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 TACSTD2P09758 323 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 ALOX5APP20292 161 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 PSMB9P28065 219 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 MAP2K4P45985 399 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 RPL5P46777 297 aaKnown RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 UBE2NP61088 152 aaKnown RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 ZNF85Q03923 595 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 EMX1Q04741 257 aaPredicted RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 MRPL49Q13405 166 aaKnown RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 SPHARQ15513 63 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 CDONQ4KMG0 1287 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 C9orf135Q5VTT2 229 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 UBE2UQ5VVX9 321 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 OR7E24Q6IFN5 339 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 KRT77Q7Z794 578 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 LHFPL3Q86UP9 236 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 LINC00346Q8IVM7 164 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 LRRC18Q8N456 261 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 NANOGP1Q8N7R0 232 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 ASB5Q8WWX0 329 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 ZNF837Q96EG3 531 aaPredicted RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 C4orf36Q96KX1 117 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 HDHD2Q9H0R4 259 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 OPN3Q9H1Y3 402 aaPredicted RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 MOV10Q9HCE1 1003 aaKnown RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 GNG8Q9UK08 70 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 COPS3Q9UNS2 423 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 LHFPL6Q9Y693 200 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 DSPP15924 2871 aaKnown RBP11.26□□□□□ -0.61
CLK3-214ENST00000564096 BSNQ9UPA5 3926 aa11.26□□□□□ -0.61
CLK3-214ENST00000564096 B8ZZF3 427 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 ZNF254O75437 659 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 RAD51DO75771 328 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 PCMT1P22061 227 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 IGHV1-2P23083 117 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 IL32P24001 234 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 CHRNB4P30926 498 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 TTKP33981 857 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 RPS27P42677 84 aaKnown RBP11.25□□□□□ -0.61
CLK3-214ENST00000564096 RIDAP52758 137 aaKnown RBP11.25□□□□□ -0.61
CLK3-214ENST00000564096 GBX2P52951 348 aaPredicted RBP11.25□□□□□ -0.61
CLK3-214ENST00000564096 GRB2P62993 217 aaKnown RBP11.25□□□□□ -0.61
CLK3-214ENST00000564096 BDH1Q02338 343 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 ROM1Q03395 351 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 BLMHQ13867 455 aa11.25□□□□□ -0.61
CLK3-214ENST00000564096 ENDOGQ14249 297 aaKnown RBP11.25□□□□□ -0.61
CLK3-214ENST00000564096 RAB35Q15286 201 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms