RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 OR52N5Q8NH56 324 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 IPCEF1Q8WWN9 437 aaPredicted RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 C11orf40Q8WZ69 217 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 ZNF837Q96EG3 531 aaPredicted RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 MRPL48Q96GC5 212 aaKnown RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 WFIKKN1Q96NZ8 548 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 INTS14Q96SY0 518 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 ZNF184Q99676 751 aaPredicted RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 KCNS3Q9BQ31 491 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 MED20Q9H944 212 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 RASSF1Q9NS23 344 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 HAO2Q9NYQ3 351 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 RPL36Q9Y3U8 105 aaKnown RBP8.08□□□□□ -1.12
LDLR-210ENST00000559340 TMEM14AQ9Y6G1 99 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 NOTCH2Q04721 2471 aa8.08□□□□□ -1.12
LDLR-210ENST00000559340 PLCE1Q9P212 2302 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 FAM171A2A8MVW0 826 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 DCTN6O00399 190 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 ZNF593O00488 134 aaPredicted RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 PHYHO14832 338 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 GYPBP06028 91 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 COX6B1P14854 86 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 SLC2A5P22732 501 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 PTAFRP25105 342 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 ECH1Q13011 328 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 MED21Q13503 144 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 MAD2L1BPQ15013 274 aaPredicted RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 TAB1Q15750 504 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 KLHL22Q53GT1 634 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 SP5Q6BEB4 398 aaPredicted RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 UNQ6126/PRO20091Q6UXV3 157 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 SLC16A9Q7RTY1 509 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 WFDC8Q8IUA0 241 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 ERI1Q8IV48 349 aaKnown RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 ENTHD1Q8IYW4 607 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 OR51L1Q8NGJ5 315 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 LINC01560Q8TB33 94 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 NABP1Q96AH0 204 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 ZMYND19Q96E35 227 aaPredicted RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 ZNF582Q96NG8 517 aaPredicted RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 SH3GL3Q99963 347 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 ZNF416Q9BWM5 594 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 YIPF3Q9GZM5 350 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 ESRP2Q9H6T0 727 aaKnown RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 MARCH7Q9H992 704 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 NPDC1Q9NQX5 325 aaPredicted RBP8.07□□□□□ -1.12
LDLR-210ENST00000559340 KCNN3Q9UGI6 736 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 SLC25A15Q9Y619 301 aa8.07□□□□□ -1.12
LDLR-210ENST00000559340 TVP23AA6NH52 213 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 VSTM5A8MXK1 200 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SGCEO43556 437 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ENTPD6O75354 484 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SEC14L2O76054 403 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 HLA-HP01893 362 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 TFP02787 698 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SERPINA5P05154 406 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SPARCP09486 303 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 GAAP10253 952 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 COX5BP10606 129 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 CLUP10909 449 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 CRYGSP22914 178 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 MYF6P23409 242 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 APLNRP35414 380 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 MTNR1AP48039 350 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 NUDT6P53370 316 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 NR1H2P55055 460 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ISL1P61371 349 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 PIGFQ07326 219 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 GGTLC2Q14390 218 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 DAZAP2Q15038 168 aaPredicted RBP8.06□□□□□ -1.12
LDLR-210ENST00000559340 TAF13Q15543 124 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 BEX5Q5H9J7 111 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 C6orf52Q5T4I8 152 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 LINC01590Q5TEZ4 76 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 KRT80Q6KB66 452 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SLC18B1Q6NT16 456 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ARL9Q6T311 187 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 TMEM108Q6UXF1 575 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 USP51Q70EK9 711 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 RHOUQ7L0Q8 258 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.06□□□□□ -1.12
LDLR-210ENST00000559340 ZNF511Q8NB15 262 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 BBS1Q8NFJ9 593 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 OR6N2Q8NGY6 317 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ASB17Q8WXJ9 295 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 UBE2FQ969M7 185 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ZC3HAV1LQ96H79 300 aaKnown RBP8.06□□□□□ -1.12
LDLR-210ENST00000559340 RADILQ96JH8 1075 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 FOXN4Q96NZ1 517 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 CNN2Q99439 309 aaKnown RBP8.06□□□□□ -1.12
LDLR-210ENST00000559340 HCAR1Q9BXC0 346 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 ANKRD60Q9BZ19 345 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 OR2H1Q9GZK4 316 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 WDR76Q9H967 626 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 EMC7Q9NPA0 242 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SCN3BQ9NY72 215 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 B3GNT2Q9NY97 397 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 DNAJC27Q9NZQ0 273 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 CRNNQ9UBG3 495 aaPredicted RBP8.06□□□□□ -1.12
LDLR-210ENST00000559340 ATPIF1Q9UII2 106 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms