RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CXCL3P19876 107 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 HOXA6P31267 233 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 KLF9Q13886 244 aaPredicted RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 TEX30Q5JUR7 227 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ZNF468Q5VIY5 522 aaPredicted RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 OR10K2Q6IF99 312 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 OR2M3Q8NG83 312 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ELP5Q8TE02 316 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ASB5Q8WWX0 329 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ZNF775Q96BV0 537 aaPredicted RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 CMKLR1Q99788 373 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.48□□□□□ -0.893e-6■■■□□ 15.2
CUX1-217ENST00000558836 CDCP1Q9H5V8 836 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ZMAT3Q9HA38 289 aaKnown RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 MOV10Q9HCE1 1003 aaKnown RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 SDHAF3Q9NRP4 125 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 DHDHQ9UQ10 334 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 P2RY10O00398 339 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 PHYHO14832 338 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 AKR7A2O43488 359 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 IL11RAQ14626 422 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 FAM198BQ6UWH4 519 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 C11orf40Q8WZ69 217 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 AKAP1Q92667 903 aaKnown RBP eCLIP9.48□□□□□ -0.89
CUX1-217ENST00000558836 MFRPQ9BY79 579 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 OR2B2Q9GZK3 357 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 OR10A4Q9H209 315 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 SLC26A1Q9H2B4 701 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 SLC39A1Q9NY26 324 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ZNF222Q9UK12 451 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 IGHV1-45A0A0A0MS14 117 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 IGHMP01871 453 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ANOS1P23352 680 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 POU3F4P49335 361 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 DAP3P51398 398 aaKnown RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 TAS2R20P59543 309 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 GUCA2AQ02747 115 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 TOMM20Q15388 145 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 C6orf183Q5T699 404 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.48□□□□□ -0.89
CUX1-217ENST00000558836 ST7LQ8TDW4 575 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ASB17Q8WXJ9 295 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 MIB2Q96AX9 1013 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 HAVCR1Q96D42 359 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 MNTQ99583 582 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 ITGB1BP2Q9UKP3 347 aa9.48□□□□□ -0.89
CUX1-217ENST00000558836 DMXL1Q9Y485 3027 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 NTN3O00634 580 aaPredicted RBP9.47□□□□□ -0.89
CUX1-217ENST00000558836 ZNF208O43345 1280 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 TRAPPC2P0DI81 140 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 TRAPPC2BP0DI82 140 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 COX6A1P12074 109 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 NAGAP17050 411 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 ROM1Q03395 351 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 C2orf76Q3KRA6 126 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 CATSPERDQ86XM0 798 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 TMEM105Q8N8V8 129 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 FCAMRQ8WWV6 532 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 SLC25A44Q96H78 314 aaPredicted RBP9.47□□□□□ -0.89
CUX1-217ENST00000558836 MRGPRX4Q96LA9 322 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 MED28Q9H204 178 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 HRASLSQ9HDD0 168 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 ALKBH4Q9NXW9 302 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 DHFRP00374 187 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 HPXP02790 462 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 CCR9P51686 369 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 CLRN1P58418 232 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 ZFP36L1Q07352 338 aaKnown RBP9.47□□□□□ -0.89
CUX1-217ENST00000558836 GLYATL3Q5SZD4 288 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 THOC7Q6I9Y2 204 aaKnown RBP9.47□□□□□ -0.89
CUX1-217ENST00000558836 C3orf33Q6P1S2 294 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 ZNF227Q86WZ6 799 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 UEVLDQ8IX04 471 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 OR11G2Q8NGC1 345 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 OR11H7Q8NGC8 314 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 OR1J4Q8NGS1 313 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 OR13C3Q8NGS6 347 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 GIMAP1Q8WWP7 306 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 SNX18Q96RF0 628 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 SOX7Q9BT81 388 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 ING3Q9NXR8 418 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 KLHL9Q9P2J3 617 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 STEAP1Q9UHE8 339 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 ELF5Q9UKW6 265 aaPredicted RBP9.47□□□□□ -0.89
CUX1-217ENST00000558836 B3GALT5Q9Y2C3 310 aa9.47□□□□□ -0.89
CUX1-217ENST00000558836 LOC107986453A0A1B0GWG9 222 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 A6NIZ1 184 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 KRT33AO76009 404 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 DKK1O94907 266 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 CER1O95813 267 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 YES1P07947 543 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 H2BFMP0C1H6 154 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 OTX2P32243 289 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 PRKXP51817 358 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 SUMO3P55854 103 aaPredicted RBP9.46□□□□□ -0.89
CUX1-217ENST00000558836 RAP1BP61224 184 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 RAP1AP62834 184 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 ZP4Q12836 540 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 CDK10Q15131 360 aa9.46□□□□□ -0.89
CUX1-217ENST00000558836 ST3GAL2Q16842 350 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms