RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 AMELYQ99218 206 aa15□□□□□ -0.01
LDLR-206ENST00000557958 FAM173AQ9BQD7 235 aa15□□□□□ -0.01
LDLR-206ENST00000557958 MRI1Q9BV20 369 aa15□□□□□ -0.01
LDLR-206ENST00000557958 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15□□□□□ -0.011e-12■□□□□ 9.5
LDLR-206ENST00000557958 POLE4Q9NR33 117 aa15□□□□□ -0.01
LDLR-206ENST00000557958 EPXP11678 715 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 PSKH1P11801 424 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 IL7P13232 177 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 APEX1P27695 318 aaKnown RBP14.99□□□□□ -0.01
LDLR-206ENST00000557958 RRADP55042 308 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 RIN1Q13671 783 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 DEFB109BQ30KR1 87 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 DCXRQ7Z4W1 244 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 SAMD12Q8N8I0 201 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 TRMT10AQ8TBZ6 339 aaKnown RBP14.99□□□□□ -0.01
LDLR-206ENST00000557958 RGP1Q92546 391 aaPredicted RBP14.99□□□□□ -0.01
LDLR-206ENST00000557958 HPS1Q92902 700 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 PNPLA2Q96AD5 504 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 SFXN2Q96NB2 322 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 ZCCHC4Q9H5U6 513 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 TIGARQ9NQ88 270 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 ASPMQ8IZT6 3477 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 A0A1W2PPL8 197 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 LRRC3CA6NJW4 275 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 ACOD1A6NK06 481 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 MPZL1O95297 269 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 GDF1P27539 372 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 THBS2P35442 1172 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 GUCA1AP43080 201 aaPredicted RBP14.99□□□□□ -0.01
LDLR-206ENST00000557958 BCL2A1Q16548 175 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 WDR38Q5JTN6 314 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 SPINK14Q6IE38 97 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 OR7E24Q6IFN5 339 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.99□□□□□ -0.01
LDLR-206ENST00000557958 CYSLTR2Q9NS75 346 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 GTF2A1LQ9UNN4 478 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 POLR1DQ9Y2S0 133 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 LRP12Q9Y561 859 aa14.99□□□□□ -0.01
LDLR-206ENST00000557958 A0A0G2JMM0 328 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 A0A1W2PPB8 328 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 A0A1W2PRS3 328 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 ZNF891A8MT65 544 aaPredicted RBP14.98□□□□□ -0.01
LDLR-206ENST00000557958 KIR3DP1A8MWS1 328 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 ZNF814B7Z6K7 855 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 TRAPPC6AO75865 159 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 CD96P40200 585 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 AGFG1P52594 562 aaKnown RBP14.98□□□□□ -0.01
LDLR-206ENST00000557958 CLDN17P56750 224 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 RAC3P60763 192 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 TRIQKQ629K1 86 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 ESPNLQ6ZVH7 1005 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 TSEN15Q8WW01 171 aaKnown RBP14.98□□□□□ -0.01
LDLR-206ENST00000557958 SOSTQ9BQB4 213 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 SF3B5Q9BWJ5 86 aaKnown RBP14.98□□□□□ -0.01
LDLR-206ENST00000557958 OR2B2Q9GZK3 357 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 EXTL2Q9UBQ6 330 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 R4GMQ9 66 aa14.98□□□□□ -0.01
LDLR-206ENST00000557958 IGKV1D-43A0A0B4J1Z2 117 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 TNFSF11O14788 317 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 H2BFMP0C1H6 154 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 SLC2A2P11168 524 aaPredicted RBP14.97□□□□□ -0.01
LDLR-206ENST00000557958 ELK1P19419 428 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 NPR2P20594 1047 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 B3GALT5-AS1P59052 145 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 HIST3H3Q16695 136 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 SLC25A35Q3KQZ1 300 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 PDSS1Q5T2R2 415 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 CARD17Q5XLA6 110 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 ASB18Q6ZVZ8 466 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 SPATC1Q76KD6 591 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 YRDCQ86U90 279 aaKnown RBP14.97□□□□□ -0.01
LDLR-206ENST00000557958 ZNF227Q86WZ6 799 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 PRSS35Q8N3Z0 413 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 Q8N402 240 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 OR2AJ1Q8NGZ0 328 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 ZNF671Q8TAW3 534 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 ST7LQ8TDW4 575 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 RNF133Q8WVZ7 376 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 C11orf40Q8WZ69 217 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 CMTM3Q96MX0 182 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 SMAD5Q99717 465 aaKnown RBP14.97□□□□□ -0.01
LDLR-206ENST00000557958 C1orf198Q9H425 327 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 PPP1R3EQ9H7J1 279 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 BRD7Q9NPI1 651 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 A0A0J9YW62 118 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 AIPO00170 330 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 PIN1P1O15428 100 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 WDPCPO95876 746 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 CD2P06729 351 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 KIR3DL2P43630 455 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 CSNK1A1P48729 337 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 BAK1Q16611 211 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 SLC25A47Q6Q0C1 308 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 KLHL24Q6TFL4 600 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 BAIAP2L2Q6UXY1 529 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 C19orf18Q8NEA5 215 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 OR9K2Q8NGE7 335 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 OR6N1Q8NGY5 312 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 HTRA1Q92743 480 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 MCHR2Q969V1 340 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms