RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ISG15P05161 165 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 ST6GAL1P15907 406 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 TBPP20226 339 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 ZBTB25P24278 435 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 RPL27P61353 136 aaKnown RBP14.66□□□□□ -0.06
SHMT2-231ENST00000557433 PPIAP62937 165 aaKnown RBP14.66□□□□□ -0.06
SHMT2-231ENST00000557433 SGCBQ16585 318 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 ODF4Q2M2E3 257 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 GLYATL3Q5SZD4 288 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 PAPD4Q6PIY7 484 aaKnown RBP14.66□□□□□ -0.06
SHMT2-231ENST00000557433 C17orf107Q6ZR85 190 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 ARMC10Q8N2F6 343 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 SVBPQ8N300 66 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 ZSCAN1Q8NBB4 408 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 INO80EQ8NBZ0 244 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-231ENST00000557433 THAP6Q8TBB0 222 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 STK35Q8TDR2 534 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 MITD1Q8WV92 249 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 SLC46A1Q96NT5 459 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 CDC6Q99741 560 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 ZNF471Q9BX82 626 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-231ENST00000557433 FAM60AQ9NP50 221 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 HHLA2Q9UM44 414 aa14.66□□□□□ -0.06
SHMT2-231ENST00000557433 MYO7AQ13402 2215 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 OIP5O43482 229 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 IGHMP01871 453 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 CLPSP04118 112 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 CXCR1P25024 350 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 NR0B2Q15466 257 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 TAF13Q15543 124 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 ASPHD2Q6ICH7 369 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 LRRC69Q6ZNQ3 347 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 FRMD1Q8N878 549 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 GATSQ8NAP1 163 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 PLPP7Q8NBV4 271 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 OR13C8Q8NGS7 320 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 STOML3Q8TAV4 291 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 ZNF519Q8TB69 540 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 SLC37A2Q8TED4 501 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 C8orf44Q96CB5 159 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 LMF1Q96S06 567 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 PHB2Q99623 299 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 NUDT16L1Q9BRJ7 211 aaKnown RBP14.65□□□□□ -0.06
SHMT2-231ENST00000557433 HPF1Q9NWY4 346 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 GMEB2Q9UKD1 530 aa14.65□□□□□ -0.06
SHMT2-231ENST00000557433 RNF222A6NCQ9 220 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 FRG2CA6NGY1 282 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 M0QYG6 137 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 FBXO45P0C2W1 286 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 COL9A1P20849 921 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 RABIFP47224 123 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 DNASE1L1P49184 302 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 ARRB1P49407 418 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-231ENST00000557433 GSK3AP49840 483 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 PRKXP51817 358 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 ADAM8P78325 824 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 NAAAQ02083 359 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 GPM6BQ13491 265 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 RNASE10Q5GAN6 216 aaKnown RBP14.64□□□□□ -0.07
SHMT2-231ENST00000557433 PRAMEF17Q5VTA0 474 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 CBLN3Q6UW01 205 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF704Q6ZNC4 412 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-231ENST00000557433 TMEM185AQ8NFB2 350 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 AQP3Q92482 292 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 ATOH1Q92858 354 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-231ENST00000557433 SLC25A44Q96H78 314 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-231ENST00000557433 KXD1Q9BQD3 176 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 TAS2R4Q9NYW5 299 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 RAB22AQ9UL26 194 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 SLC22A13Q9Y226 551 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 R4GMQ9 66 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 IGLV1-36A0A0B4J1U3 117 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 H7C2Y5 167 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 HCRTR1O43613 425 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 CRABP1P29762 137 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 CASRP41180 1078 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 BTG2P78543 158 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 ELP2Q6IA86 826 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 PGAP1Q75T13 922 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 SPRED2Q7Z698 418 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 HEATR5AQ86XA9 2040 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 PPP1R1CQ8WVI7 109 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 PATE1Q8WXA2 126 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 NUDT9Q9BW91 350 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 FAM117AQ9C073 453 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 TXNIPQ9H3M7 391 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF230Q9UIE0 474 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-231ENST00000557433 CACNA1IQ9P0X4 2223 aa14.64□□□□□ -0.07
SHMT2-231ENST00000557433 TP53BP1Q12888 1972 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-231ENST00000557433 SULT2B1O00204 365 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 FGF16O43320 207 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 PNPP00491 289 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 PLATP00750 562 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 SPARCP09486 303 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 FNTBP49356 437 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 TAS2R31P59538 309 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 CYCSP99999 105 aaKnown RBP14.63□□□□□ -0.07
SHMT2-231ENST00000557433 INPP5JQ15735 1006 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-231ENST00000557433 PNLIPRP3Q17RR3 467 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 DEFB110Q30KQ9 67 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms