RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TUBG1P23258 451 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 WNT5AP41221 380 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 GSSP48637 474 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 GDI2P50395 445 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 LSM6P62312 80 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 MXRA7P84157 204 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 SPIBQ01892 262 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 SCRN3Q0VDG4 424 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 KCNMB1Q16558 191 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 ELFN2Q5R3F8 820 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 MBNL2Q5VZF2 373 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 LCN8Q6JVE9 175 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 C1orf94Q6P1W5 598 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 PGM2L1Q6PCE3 622 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 PRIMA1Q86XR5 153 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 LINC00471Q8N535 108 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 CCDC197Q8NCU1 140 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 RASD2Q96D21 266 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 C1orf159Q96HA4 380 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 NSL1Q96IY1 281 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 ZNF416Q9BWM5 594 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 C1orf21Q9H246 121 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 MAGIXQ9H6Y5 334 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 CHODLQ9H9P2 273 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 TUBG2Q9NRH3 451 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 FAM53CQ9NYF3 392 aa13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 CGGBP1Q9UFW8 167 aaPredicted RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 NDRG4Q9ULP0 352 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 PRPF19Q9UMS4 504 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.74□□□□□ -0.215e-6■■■□□ 18.4
CCDC88C-209ENST00000554872 ANK3Q12955 4377 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-209ENST00000554872 A0A1W2PPL8 197 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 A0A1W2PPW3 197 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 C17orf100A8MU93 164 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 H7C1C5 153 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 J3QW42 95 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 IDH3BO43837 385 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 LCKP06239 509 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 ACHEP22303 614 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 MSX2P35548 267 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 ALDH3B1P43353 468 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 CHN2P52757 468 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 LCN6P62502 163 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 AQP6Q13520 282 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 GGTLC2Q14390 218 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 RFX4Q33E94 735 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 FAM209AQ5JX71 171 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 UGT2A3Q6UWM9 527 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 ZDHHC21Q8IVQ6 265 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 GLB1L2Q8IW92 636 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 ZNF101Q8IZC7 436 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 OR52J3Q8NH60 311 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 AKR7LQ8NHP1 331 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 FANK1Q8TC84 345 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 RDH5Q92781 318 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 TRIM15Q9C019 465 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 SYT4Q9H2B2 425 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 TPK1Q9H3S4 243 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 YAE1D1Q9NRH1 226 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 EIF3KQ9UBQ5 218 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 DUSP13Q9UII6 198 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 CDC42EP3Q9UKI2 254 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 V9GYQ6 96 aa13.73□□□□□ -0.21
CCDC88C-209ENST00000554872 TCRBV5S2A0A599 114 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 C5orf49A4QMS7 147 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 B2RBV5 119 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 LILRA1O75019 489 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 KHDRBS3O75525 346 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 SCG5P05408 212 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 ATP6V1B2P21281 511 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 CRABP1P29762 137 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 RRM2P31350 389 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 SLC6A6P31641 620 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 ERVS71-1P61550 626 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 TSPAN31Q12999 210 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 MAD2L1BPQ15013 274 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 NKPD1Q17RQ9 610 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 ZNF718Q3SXZ3 478 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 DNM1P34Q6PK57 102 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 ARL9Q6T311 187 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 ZNF620Q6ZNG0 422 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 OR1J1Q8NGS3 322 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 SNX33Q8WV41 574 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 MARS2Q96GW9 593 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 OR52D1Q9H346 318 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 ELOVL3Q9HB03 270 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 HINT3Q9NQE9 182 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 TBCCD1Q9NVR7 557 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 TAAR3PQ9P1P4 343 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 LPAR3Q9UBY5 353 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 TMCC3Q9ULS5 477 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 FZR1Q9UM11 496 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 IER3IP1Q9Y5U9 82 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 LYVE1Q9Y5Y7 322 aa13.72□□□□□ -0.21
CCDC88C-209ENST00000554872 OR10H3O60404 316 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 RP2O75695 350 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 CLPTM1O96005 669 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 MT-ND5P03915 603 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 ADH4P08319 380 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 T-ENOLP0DO92 83 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms