RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TOMM20Q15388 145 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 OR7E24Q6IFN5 339 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 SPATC1Q76KD6 591 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 Q8N402 240 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 NKD1Q969G9 470 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 GFI1Q99684 422 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 KCNJ15Q99712 375 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 OR2B2Q9GZK3 357 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 LRFN1Q9P244 771 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 SPATA2Q9UM82 520 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 V9GY05 133 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 MED19A0JLT2 244 aaPredicted RBP23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 WNT11O96014 354 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 PNPP00491 289 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 SOX2P48431 317 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 CCBE1Q6UXH8 406 aaPredicted RBP23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 STAC2Q6ZMT1 411 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 DEFB124Q8NES8 71 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 IL17RDQ8NFM7 739 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 OR4M1Q8NGD0 313 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 OR14L1PQ8NHC6 308 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 RNF133Q8WVZ7 376 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 MRI1Q9BV20 369 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 SLC25A18Q9H1K4 315 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 ZFP64Q9NPA5 681 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 DEPPQ9NTK1 212 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 IL17BQ9UHF5 180 aa23.43■■□□□ 1.34
CCDC88C-205ENST00000553403 IQCJ-SCHIP1C9J366 451 aaPredicted RBP23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 AIPO00170 330 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 CD96P40200 585 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 CLDN17P56750 224 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 KCNMB1Q16558 191 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 ASB18Q6ZVZ8 466 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 YRDCQ86U90 279 aaKnown RBP23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 LINC00346Q8IVM7 164 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 MCHR2Q969V1 340 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 ORAI1Q96D31 301 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 SMAD5Q99717 465 aaKnown RBP23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 BRD7Q9NPI1 651 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 CYB5R1Q9UHQ9 305 aa23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 BOKQ9UMX3 212 aaPredicted RBP23.42■■□□□ 1.34
CCDC88C-205ENST00000553403 A0A1W2PPL8 197 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 IFITM5A6NNB3 132 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 SNRPBP14678 240 aaKnown RBP23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 MFGE8Q08431 387 aaPredicted RBP23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 CARD17Q5XLA6 110 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 TRIQKQ629K1 86 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 CREB3L2Q70SY1 520 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 LRRTM1Q86UE6 522 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 RDH10Q8IZV5 341 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 OR5H6Q8NGV6 325 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 OR10AC1Q8NH08 325 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 ADAMTS14Q8WXS8 1223 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 FER1L6-AS2Q96M78 137 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 SLC22A13Q9Y226 551 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 TNFSF11O14788 317 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 FTH1P19P0C7X4 201 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 RAC3P60763 192 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 FAM173AQ9BQD7 235 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 UTP23Q9BRU9 249 aaKnown RBP23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 C1orf198Q9H425 327 aa23.41■■□□□ 1.34
CCDC88C-205ENST00000553403 FREM3P0C091 2139 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 QDPRP09417 244 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 H2BFMP0C1H6 154 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 RFPL3SP0C7P2 107 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 ITGA3P26006 1051 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 DCTDP32321 178 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 PITPNBP48739 271 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 FOXO1Q12778 655 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 MADCAM1Q13477 382 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 TAB1Q15750 504 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 CADM3Q8N126 398 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 IL22RA1Q8N6P7 574 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 ZNF433Q8N7K0 673 aaPredicted RBP23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 C19orf18Q8NEA5 215 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 OR9K2Q8NGE7 335 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 ZNF671Q8TAW3 534 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 TMEM54Q969K7 222 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 TMEM106AQ96A25 262 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 SF3B5Q9BWJ5 86 aaKnown RBP23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 SLC22A4Q9H015 551 aa23.4■■□□□ 1.34
CCDC88C-205ENST00000553403 NPIPA2E9PIF3 369 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 NPIPA3F8WFD2 350 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 CDK2AP1O14519 115 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 NEURL1O76050 574 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 ZNF133P52736 654 aaPredicted RBP23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 PYHIN1Q6K0P9 492 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 BAIAP2L2Q6UXY1 529 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 HIST2H2ABQ8IUE6 130 aaPredicted RBP23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 TSEN15Q8WW01 171 aaKnown RBP23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 SLAMF6Q96DU3 332 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 SFXN2Q96NB2 322 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 GLTPQ9NZD2 209 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 GTF2A1LQ9UNN4 478 aa23.39■■□□□ 1.34
CCDC88C-205ENST00000553403 A0A0G2JMP0 313 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 A0A0X1KG70 313 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 PINLYPA6NC86 204 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 PCNX2A6NKB5 2137 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 NR4A2P43354 598 aa23.38■■□□□ 1.33
CCDC88C-205ENST00000553403 RFX2P48378 723 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms