RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 HRGP04196 525 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 MMP7P09237 267 aaPredicted RBP18.48■□□□□ 0.55
VPS29-206ENST00000549578 PSKH1P11801 424 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 ZNF32P17041 273 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 BLVRAP53004 296 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 CDH11P55287 796 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 LSM6P62312 80 aaKnown RBP18.48■□□□□ 0.55
VPS29-206ENST00000549578 RAB1AP62820 205 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 ADAM8P78325 824 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 IL18R1Q13478 541 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 GSG1Q2KHT4 349 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 SP5Q6BEB4 398 aaPredicted RBP18.48■□□□□ 0.55
VPS29-206ENST00000549578 USP51Q70EK9 711 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 RASSF4Q9H2L5 321 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 RNF121Q9H920 327 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 CCNB1IP1Q9NPC3 277 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 PLEKHB1Q9UF11 243 aaPredicted RBP18.48■□□□□ 0.55
VPS29-206ENST00000549578 LHFPL6Q9Y693 200 aa18.48■□□□□ 0.55
VPS29-206ENST00000549578 C12orf71A8MTZ7 269 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 MPZL2O60487 215 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 ZNF823P16415 610 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 HSPA13P48723 471 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 ZNF83P51522 516 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 MAD2L1BPQ15013 274 aaPredicted RBP18.47■□□□□ 0.55
VPS29-206ENST00000549578 CORO6Q6QEF8 472 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 ERI1Q8IV48 349 aaKnown RBP18.47■□□□□ 0.55
VPS29-206ENST00000549578 LINC00346Q8IVM7 164 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 C8orf59Q8N0T1 100 aaPredicted RBP18.47■□□□□ 0.55
VPS29-206ENST00000549578 SETD9Q8NE22 299 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 APH1BQ8WW43 257 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 SPOCK3Q9BQ16 436 aa18.47■□□□□ 0.55
VPS29-206ENST00000549578 SLC22A31A6NKX4 558 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 SELENOFO60613 162 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 MRPL3P09001 348 aaKnown RBP18.46■□□□□ 0.55
VPS29-206ENST00000549578 EPXP11678 715 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 NAA10P41227 235 aaPredicted RBP18.46■□□□□ 0.55
VPS29-206ENST00000549578 ISL1P61371 349 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 AQP6Q13520 282 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 OCLNQ16625 522 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 SLC25A30Q5SVS4 291 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 LCN1P1Q5VSP4 162 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 TIGD4Q8IY51 512 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 CNIH3Q8TBE1 160 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 FAM222BQ8WU58 562 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 INTS14Q96SY0 518 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 CDADC1Q9BWV3 514 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 MARCH7Q9H992 704 aa18.46■□□□□ 0.55
VPS29-206ENST00000549578 PKDREJQ9NTG1 2253 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 CASKO14936 926 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 WBP4O75554 376 aaKnown RBP18.45■□□□□ 0.54
VPS29-206ENST00000549578 RAB36O95755 333 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 CELA3BP08861 270 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 SPARCP09486 303 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 CBR1P16152 277 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 CRYGSP22914 178 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 HTR1FP30939 366 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 ENTPD1P49961 510 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 IDH3GP51553 393 aaPredicted RBP18.45■□□□□ 0.54
VPS29-206ENST00000549578 PCBD1P61457 104 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 MEDAGQ5VYS4 303 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 TMEM53Q6P2H8 277 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 DPPA2Q7Z7J5 298 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 MYPOPQ86VE0 399 aaPredicted RBP18.45■□□□□ 0.54
VPS29-206ENST00000549578 OR6N2Q8NGY6 317 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 SMAP2Q8WU79 429 aaPredicted RBP18.45■□□□□ 0.54
VPS29-206ENST00000549578 RFKQ969G6 155 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 ZNF75AQ96N20 296 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 ZNF184Q99676 751 aaPredicted RBP18.45■□□□□ 0.54
VPS29-206ENST00000549578 CLN6Q9NWW5 311 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 CYB5R1Q9UHQ9 305 aa18.45■□□□□ 0.54
VPS29-206ENST00000549578 M0R1B8 84 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 ZNF593O00488 134 aaPredicted RBP18.44■□□□□ 0.54
VPS29-206ENST00000549578 RER1O15258 196 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 IGKV3-15P01624 115 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 ARR3P36575 388 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 NUDT6P53370 316 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 PSG4Q00888 419 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 RAB39AQ14964 217 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 PABPC1L2AQ5JQF8 200 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 C1QTNF12Q5T7M4 302 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 SLC18B1Q6NT16 456 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 SSX8Q7RTT4 187 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 SYT9Q86SS6 491 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 AKR7LQ8NHP1 331 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 MS4A3Q96HJ5 214 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 OR2H1Q9GZK4 316 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 WARS2Q9UGM6 360 aaKnown RBP18.44■□□□□ 0.54
VPS29-206ENST00000549578 KCNG2Q9UJ96 466 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 TIMM10BQ9Y5J6 103 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 PTPN13Q12923 2485 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 IGHV1-18A0A0C4DH31 117 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 SIAH2O43255 324 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 APOL3O95236 402 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 COX6B1P14854 86 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 SCRN3Q0VDG4 424 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 SMN1Q16637 294 aaKnown RBP18.44■□□□□ 0.54
VPS29-206ENST00000549578 ZNF774Q6NX45 483 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 CFAP77Q6ZQR2 320 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 DPY19L4Q7Z388 723 aa18.44■□□□□ 0.54
VPS29-206ENST00000549578 ZNF584Q8IVC4 421 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms