RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	OR51D1	Q8NGF3	324 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	SMIM4	Q8WVI0	70 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	OR1F2P	Q96R84	312 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	DMRTA2	Q96SC8	542 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	EMC6	Q9BV81	110 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	APMAP	Q9HDC9	416 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	B9D1	Q9UPM9	204 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	ASPM	Q8IZT6	3477 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286		A0A1B0GX78	115 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	ALG1L2	C9J202	215 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	LMX1B	O60663	402 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	ARRB1	P49407	418 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	HLX	Q14774	488 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	TMEM69	Q5SWH9	247 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	ASPHD2	Q6ICH7	369 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	GUSBP11	Q6P575	273 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	ZNF454	Q8N9F8	522 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	OR11G2	Q8NGC1	345 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	SCARB1	Q8WTV0	552 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	TSEN15	Q8WW01	171 aa	Known RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	DAZL	Q92904	295 aa	Known RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	SEC22C	Q9BRL7	303 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	EXOSC3	Q9NQT5	275 aa	Known RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	CA10	Q9NS85	328 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	COA3	Q9Y2R0	106 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	PRRC2C	Q9Y520	2896 aa	Known RBP	13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	NCOR1	O75376	2440 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	EIF1AY	O14602	144 aa	Known RBP	13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	SIGLEC5	O15389	551 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	GPRIN2	O60269	458 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	KHDRBS3	O75525	346 aa	Known RBP	13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	TGM6	O95932	706 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	EIF1AX	P47813	144 aa	Known RBP	13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	PITPNA	Q00169	270 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	DHODH	Q02127	395 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	SIGLEC14	Q08ET2	396 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	IL10RA	Q13651	578 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	SHB	Q15464	509 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	C1orf140	Q5VVS0	124 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	LRRTM1	Q86UE6	522 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	LRFN5	Q96NI6	719 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	C7orf50	Q9BRJ6	194 aa	Known RBP	13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	HRASLS	Q9HDD0	168 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	FOXJ3	Q9UPW0	622 aa		13.27	□□□□□ -0.28
DDX55-209	ENST00000542286	TRAV36DV7	A0A075B6V5	113 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	FAM74A7	A6NL05	159 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	ADAM10	O14672	748 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	ITGA10	O75578	1167 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	B3GALNT1	O75752	331 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	ANXA2	P07355	339 aa	Known RBP	13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	CCR9	P51686	369 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	RNF4	P78317	190 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	ADAM8	P78325	824 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	FAM74A3	Q4VXF1	159 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	OR6C1	Q96RD1	312 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	EVA1A	Q9H8M9	152 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	TAS2R10	Q9NYW0	307 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	EMC3	Q9P0I2	261 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	SUSD2	Q9UGT4	822 aa		13.27	□□□□□ -0.29
DDX55-209	ENST00000542286	PRSS37	A4D1T9	235 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	ARPC1B	O15143	372 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	NUDT21	O43809	227 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	FADS1	O60427	444 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR6A2	O95222	327 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	TACSTD2	P09758	323 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	UBE2M	P61081	183 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR7A5	Q15622	319 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	ISX	Q2M1V0	245 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	SLC43A2	Q8N370	569 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR4D10	Q8NGI6	311 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	RPS4Y2	Q8TD47	263 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	LIPH	Q8WWY8	451 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	C12orf57	Q99622	126 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	ZMAT3	Q9HA38	289 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	EML6	Q6ZMW3	1958 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	MASP2	O00187	686 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	TXNDC12	O95881	172 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	ITGA5	P08648	1049 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	GLB1	P16278	677 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	ANXA7	P20073	488 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	PGC	P20142	388 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	RAD52	P43351	418 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	P2RX1	P51575	399 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	AFF3	P51826	1226 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	DYRK1A	Q13627	763 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	DMRTC1	Q5HYR2	192 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	METTL11B	Q5VVY1	283 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	DND1	Q8IYX4	353 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	CADM4	Q8NFZ8	388 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OTOS	Q8NHW6	89 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	SLC41A2	Q96JW4	573 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	CPAMD8	Q8IZJ3	1885 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	URB1	O60287	2271 aa	Known RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	OR6C65	A6NJZ3	312 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	ABCD4	O14678	606 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	RP2	O75695	350 aa		13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	HOXB1	P14653	301 aa	Predicted RBP	13.26	□□□□□ -0.29
DDX55-209	ENST00000542286	S100A11	P31949	105 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms