RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PPP1R3DO95685 299 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 FAM157BP0CG42 384 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 GIFP27352 417 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 IFNGR2P38484 337 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 PDLIM4P50479 330 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 RPS6KA3P51812 740 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 PCBD1P61457 104 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 ERVS71-1P61550 626 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 HSF2Q03933 536 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 TRAP1Q12931 704 aaKnown RBP12.17□□□□□ -0.46
USP28-209ENST00000540925 TMEM255AQ5JRV8 349 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 GLB1L2Q8IW92 636 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 ZNF101Q8IZC7 436 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 LINC00471Q8N535 108 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 OR9Q2Q8NGE9 314 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 GNPDA2Q8TDQ7 276 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 NEU4Q8WWR8 484 aaPredicted RBP12.17□□□□□ -0.46
USP28-209ENST00000540925 SYT3Q9BQG1 590 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 BCL2L14Q9BZR8 327 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 NUAK2Q9H093 628 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 CDH20Q9HBT6 801 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 EMC7Q9NPA0 242 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 TMCC3Q9ULS5 477 aa12.17□□□□□ -0.46
USP28-209ENST00000540925 SONP18583 2426 aaKnown RBP12.17□□□□□ -0.46
USP28-209ENST00000540925 C12orf71A8MTZ7 269 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 M0R233 179 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 TNFRSF11BO00300 401 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 CD5LO43866 347 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 SLC16A7O60669 478 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 KHDRBS3O75525 346 aaKnown RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 CLPTM1O96005 669 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 GAAP10253 952 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 COX5BP10606 129 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 SLC6A6P31641 620 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 APLNRP35414 380 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 RAD52P43351 418 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 NR4A2P43354 598 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 LSM6P62312 80 aaKnown RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 RGS7BPQ6MZT1 257 aaPredicted RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 ZNF774Q6NX45 483 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 ADGRG5Q8IZF4 528 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 ZNF786Q8N393 782 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 CCDC124Q96CT7 223 aaKnown RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 MARS2Q96GW9 593 aaKnown RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 SAMD8Q96LT4 415 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 TSSK2Q96PF2 358 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 ERMAPQ96PL5 475 aaPredicted RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 DDOQ99489 341 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 LRMDAQ9H2I8 198 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 IL20Q9NYY1 176 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 REV1Q9UBZ9 1251 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 FZR1Q9UM11 496 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 COA3Q9Y2R0 106 aaPredicted RBP12.16□□□□□ -0.46
USP28-209ENST00000540925 CDH10Q9Y6N8 788 aa12.16□□□□□ -0.46
USP28-209ENST00000540925 C5orf49A4QMS7 147 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 INAFM1C9JVW0 142 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 BHLHE40O14503 412 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 IDH3BO43837 385 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 MPZL1O95297 269 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 STAMBPO95630 424 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 GASTP01350 101 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 IGHV3-13P01766 116 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 TP53P04637 393 aaPredicted RBP12.15□□□□□ -0.46
USP28-209ENST00000540925 RAP2AP10114 183 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 DAOP14920 347 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 HIST1H1CP16403 213 aaKnown RBP12.15□□□□□ -0.46
USP28-209ENST00000540925 GUCA1AP43080 201 aaPredicted RBP12.15□□□□□ -0.46
USP28-209ENST00000540925 ALDH3B1P43353 468 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 HIST1H3AP68431 136 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 AQP6Q13520 282 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 RIN1Q13671 783 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 MAD2L1BPQ15013 274 aaPredicted RBP12.15□□□□□ -0.46
USP28-209ENST00000540925 TMEM249Q2WGJ8 235 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 FAM98BQ52LJ0 330 aaKnown RBP12.15□□□□□ -0.46
USP28-209ENST00000540925 ZNF362Q5T0B9 420 aaPredicted RBP12.15□□□□□ -0.46
USP28-209ENST00000540925 HIST2H3PS2Q5TEC6 136 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 OR2T5Q6IEZ7 315 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 RFPL4BQ6ZWI9 263 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 HIST2H3AQ71DI3 136 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 ZBTB46Q86UZ6 589 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 OR6V1Q8N148 313 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 OR8D4Q8NGM9 314 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 OR2T29Q8NH02 315 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 FOXN4Q96NZ1 517 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 THTPAQ9BU02 230 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 DGCR6LQ9BY27 220 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 PLA2G12AQ9BZM1 189 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 RACGAP1Q9H0H5 632 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 MS4A5Q9H3V2 200 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 DYNLRB1Q9NP97 96 aa12.15□□□□□ -0.46
USP28-209ENST00000540925 OR6C68A6NDL8 312 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 OR6C6A6NF89 314 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 AQP12BA6NM10 295 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 NCR1O76036 304 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 USF1P22415 310 aaPredicted RBP12.14□□□□□ -0.47
USP28-209ENST00000540925 CRABP1P29762 137 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 GDI2P50395 445 aaKnown RBP12.14□□□□□ -0.47
USP28-209ENST00000540925 KLF3P57682 345 aaPredicted RBP12.14□□□□□ -0.47
USP28-209ENST00000540925 SCRN3Q0VDG4 424 aa12.14□□□□□ -0.47
USP28-209ENST00000540925 DBPQ10586 325 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms