RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MEF2DQ14814 521 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PON3Q15166 354 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PTPRRQ15256 657 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 HSPB2Q16082 182 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 FAM78AQ5JUQ0 283 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PIP5KL1Q5T9C9 394 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR4C11Q6IEV9 310 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 C11orf87Q6NUJ2 197 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 C22orf39Q6P5X5 142 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ATRAIDQ6UW56 229 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 TMEM205Q6UW68 189 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GDPD4Q6W3E5 623 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 FCRLAQ7L513 359 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 TMEM200AQ86VY9 491 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 DEFB123Q8N688 67 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 STEAP2Q8NFT2 490 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR5M1Q8NGP8 315 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR6K2Q8NGY2 324 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 FIBINQ8TAL6 211 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 NANPQ8TBE9 248 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ADAMTS15Q8TE58 950 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GLYATL1Q969I3 302 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 PGLYRP3Q96LB9 341 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 AMDHD1Q96NU7 426 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GPA33Q99795 319 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GAL3ST1Q99999 423 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 EDEM2Q9BV94 578 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 MS4A8Q9BY19 250 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 OR51V1Q9H2C8 321 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 C1orf198Q9H425 327 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 DPEP2Q9H4A9 486 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ZDHHC6Q9H6R6 413 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 AUNIPQ9H7T9 357 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 RNF122Q9H9V4 155 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 NIT2Q9NQR4 276 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 EXOSC3Q9NQT5 275 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 SPHK2Q9NRA0 654 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 GSN-AS1Q9NRJ2 163 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 SIRT3Q9NTG7 399 aaPredicted RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 UFSP2Q9NUQ7 469 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ASF1BQ9NVP2 202 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 METTL1Q9UBP6 276 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 TNFSF18Q9UNG2 199 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ERVK-19Q9WJR5 959 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 CCL26Q9Y258 94 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 AK6Q9Y3D8 172 aaKnown RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 WIF1Q9Y5W5 379 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 ARID1BQ8NFD5 2236 aaPredicted RBP5.94□□□□□ -1.46
USP28-202ENST00000535607 DOCK8Q8NF50 2099 aa5.94□□□□□ -1.46
USP28-202ENST00000535607 CKAP5Q14008 2032 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TBC1D3KA0A087X1G2 549 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 A0A0A6YYH2 397 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 CENPVL1A0A0U1RR11 272 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 OR6C68A6NDL8 312 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TBC1D3BA6NDS4 549 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TBC1D3FA6NER0 549 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 A6NJ64 397 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 C1QTNF3-AMACRE9PGA6 284 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PLPP1O14494 284 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 BHLHE40O14503 412 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 MAGEB4O15481 346 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 FGF16O43320 207 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 MBTPS2O43462 519 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 EIF4E2O60573 245 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 EIF3GO75821 320 aaKnown RBP eCLIP5.93□□□□□ -1.46
USP28-202ENST00000535607 NXPH3O95157 252 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 AK1P00568 194 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 IFNA17P01571 189 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 CRYBA1P05813 215 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DBIP07108 87 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 CHRM4P08173 479 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 FBP1P09467 338 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 SPP1P10451 314 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 ZNF14P17017 642 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 HLA-GP17693 338 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 MAOAP21397 527 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 GATA3P23771 443 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DPP4P27487 766 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TEAD1P28347 426 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 BSGP35613 385 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PTH2RP49190 550 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 CSNK1EP49674 416 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 SGSHP51688 502 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 LUMP51884 338 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 OR12D2P58182 307 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DEFA6Q01524 100 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 GGTLC2Q14390 218 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TAF13Q15543 124 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PNLIPRP3Q17RR3 467 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 EIF2S3LQ2VIR3 472 aaKnown RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 LBHQ53QV2 105 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 MANEAQ5SRI9 462 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 C9orf64Q5T6V5 341 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 PRAMEF17Q5VTA0 474 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 TBC1D3GQ6DHY5 549 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 JMJD6Q6NYC1 403 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 FAHD2BQ6P2I3 314 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 FAM199XQ6PEV8 388 aaPredicted RBP5.93□□□□□ -1.46
USP28-202ENST00000535607 TMEM220Q6QAJ8 160 aa5.93□□□□□ -1.46
USP28-202ENST00000535607 DRAM2Q6UX65 266 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms