RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 C1orf122Q6ZSJ8 110 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 ZCCHC23Q6ZST2 131 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 SERPINA11Q86U17 422 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 WFDC3Q8IUB2 231 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 PEX5LQ8IYB4 626 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 FNDC5Q8NAU1 212 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 OR2Z1Q8NG97 314 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 ABHD4Q8TB40 342 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 TMEM54Q969K7 222 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 R3HDM4Q96D70 268 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 SLC41A3Q96GZ6 507 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 TMEM246Q9BRR3 403 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 SLC35A5Q9BS91 424 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 SEMA6AQ9H2E6 1030 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 GAR1Q9NY12 217 aaKnown RBP6.78□□□□□ -1.32
CD44-232ENST00000531118 GLTPQ9NZD2 209 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 PRDM4Q9UKN5 801 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 U3KQK5 164 aa6.78□□□□□ -1.32
CD44-232ENST00000531118 TRAV36DV7A0A075B6V5 113 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 ANKRD61A6NGH8 418 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 E9PQ18 207 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 RNASEK-C17orf49H0YIS7 233 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 CPSF4O95639 269 aaKnown RBP6.77□□□□□ -1.33
CD44-232ENST00000531118 CYB5R3P00387 301 aaPredicted RBP6.77□□□□□ -1.33
CD44-232ENST00000531118 BGLAPP02818 100 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 OPN1SWP03999 348 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 GCAP28676 217 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 BIDP55957 195 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 PPP1CBP62140 327 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 IKZF1Q13422 519 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 PABPC1L2AQ5JQF8 200 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 CASC10Q5T4H9 136 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 SLC35E4Q6ICL7 350 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 C11orf88Q6PI97 169 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 Q6ZR03 302 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 PTOV1Q86YD1 416 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 SCAIQ8N9R8 606 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 SPATA4Q8NEY3 305 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 VPS37AQ8NEZ2 397 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 OR4F17Q8NGA8 305 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 OR52P1PQ8NH57 321 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 ZNF420Q8TAQ5 688 aaPredicted RBP6.77□□□□□ -1.33
CD44-232ENST00000531118 LHX4Q969G2 390 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 POM121L2Q96KW2 1035 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 WDFY2Q96P53 400 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 OR2V2Q96R30 315 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 OR4F4Q96R69 305 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 SIRPDQ9H106 197 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 PPA2Q9H2U2 334 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 PRR13Q9NZ81 148 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 IL19Q9UHD0 177 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 CHST2Q9Y4C5 530 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 CSMD3Q7Z407 3707 aa6.77□□□□□ -1.33
CD44-232ENST00000531118 LOC100509620A0A075B734 347 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 C5orf49A4QMS7 147 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 IFNL4K9M1U5 179 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 GLRA3O75311 464 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 FBP1P09467 338 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 NR2F1P10589 423 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 G6PDP11413 515 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 AHCYP23526 432 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 SLC6A2P23975 617 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 STOMP27105 288 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 ETV4P43268 484 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 KRTAP10-11P60412 298 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 HOXC5Q00444 222 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 COX10Q12887 443 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 MELKQ14680 651 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 MAPK11Q15759 364 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 C6orf136Q5SQH8 315 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 METTL11BQ5VVY1 283 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 PGBD2Q6P3X8 592 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 UNQ6126/PRO20091Q6UXV3 157 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 NET1Q7Z628 596 aaPredicted RBP6.76□□□□□ -1.33
CD44-232ENST00000531118 ZER1Q7Z7L7 766 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 LRRC34Q8IZ02 419 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 CLIP4Q8N3C7 705 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 SPERTQ8NA61 448 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 HIPK4Q8NE63 616 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 OR4C13Q8NGP0 309 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 ACMSDQ8TDX5 336 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 TECTBQ96PL2 329 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 MTHFD2LQ9H903 347 aaPredicted RBP6.76□□□□□ -1.33
CD44-232ENST00000531118 C12orf10Q9HB07 376 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 GCM1Q9NP62 436 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 EIF3KQ9UBQ5 218 aaKnown RBP6.76□□□□□ -1.33
CD44-232ENST00000531118 PYCARDQ9ULZ3 195 aa6.76□□□□□ -1.33
CD44-232ENST00000531118 A0A087WUV0 522 aaPredicted RBP6.75□□□□□ -1.33
CD44-232ENST00000531118 LOC100996750A0A140TA64 210 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 A0A1B0GWA3 101 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 LRRN3E7EW58 273 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 SURF4O15260 269 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 PLIN3O60664 434 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 CHRNGP07510 517 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 PGA4P0DJD7 388 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 PGA3P0DJD8 388 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 VSIG10L2P0DP72 767 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 ZNF32P17041 273 aa6.75□□□□□ -1.33
CD44-232ENST00000531118 MSX2P35548 267 aaPredicted RBP6.75□□□□□ -1.33
CD44-232ENST00000531118 GDI2P50395 445 aaKnown RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms