RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GADD45GO95257 159 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 FARS2O95363 451 aaKnown RBP9.1□□□□□ -0.95
CD44-227ENST00000528086 GAAP10253 952 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 USF1P22415 310 aaPredicted RBP9.1□□□□□ -0.95
CD44-227ENST00000528086 FPR3P25089 353 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 IFNA8P32881 189 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 RPL4P36578 427 aaKnown RBP9.1□□□□□ -0.95
CD44-227ENST00000528086 MEP1BQ16820 701 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 RFX4Q33E94 735 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 SPATS1Q496A3 300 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 CCDC92Q53HC0 331 aaPredicted RBP9.1□□□□□ -0.95
CD44-227ENST00000528086 SPATA46Q5T0L3 261 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 C16orf89Q6UX73 402 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 DPY19L2P2Q6ZN68 376 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 DPPA2Q7Z7J5 298 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 ZDHHC21Q8IVQ6 265 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 OR6V1Q8N148 313 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 CCDC197Q8NCU1 140 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 UBASH3BQ8TF42 649 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 C11orf40Q8WZ69 217 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 SLC7A6Q92536 515 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 MSI2Q96DH6 328 aaKnown RBP9.1□□□□□ -0.95
CD44-227ENST00000528086 SAMD8Q96LT4 415 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 MDFIQ99750 246 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 RACGAP1Q9H0H5 632 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 OR52D1Q9H346 318 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 GRHPRQ9UBQ7 328 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 DUSP13Q9UII6 198 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 KLHL21Q9UJP4 597 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 FBXL3Q9UKT7 428 aa9.1□□□□□ -0.95
CD44-227ENST00000528086 FAM32AQ9Y421 112 aaKnown RBP9.1□□□□□ -0.95
CD44-227ENST00000528086 COL6A5A8TX70 2615 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 C5orf49A4QMS7 147 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 M0R233 179 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 NDUFS8O00217 210 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 ARPC3O15145 178 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 AHCYL1O43865 530 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 IGHV3-13P01766 116 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 TFP02787 698 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 FABP3P05413 133 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 TACSTD2P09758 323 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 CSF3P09919 207 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 BMP4P12644 408 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 APEHP13798 732 aaKnown RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 HIST1H1CP16403 213 aaKnown RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 MSR1P21757 451 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 ERFP50548 548 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 MMP15P51511 669 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 HIST1H3AP68431 136 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 TRIM25Q14258 630 aaKnown RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 GGTLC2Q14390 218 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 KCNMB1Q16558 191 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 TBC1D28Q2M2D7 210 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 HIST2H3PS2Q5TEC6 136 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 GKAP1Q5VSY0 366 aaPredicted RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 GPR139Q6DWJ6 353 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 RGS7BPQ6MZT1 257 aaPredicted RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 PGM2L1Q6PCE3 622 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 SMARCD3Q6STE5 483 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 ZNF620Q6ZNG0 422 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 HIST2H3AQ71DI3 136 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 VASH1Q7L8A9 365 aaPredicted RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 TMEM179BQ7Z7N9 219 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 HIPK1Q86Z02 1210 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 ADGRG5Q8IZF4 528 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 NPEPL1Q8NDH3 523 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 SLC25A40Q8TBP6 338 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 IPCEF1Q8WWN9 437 aaPredicted RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 NEU4Q8WWR8 484 aaPredicted RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 SLC7A6OSQ96CW6 309 aaPredicted RBP9.09□□□□□ -0.95
CD44-227ENST00000528086 NMNAT3Q96T66 252 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 OR2J1Q9GZK6 312 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 RAB1BQ9H0U4 201 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 FN3KQ9H479 309 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 EGLN3Q9H6Z9 239 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 CDH20Q9HBT6 801 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 YAE1D1Q9NRH1 226 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 TAAR3PQ9P1P4 343 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 B9D1Q9UPM9 204 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 TIMM10BQ9Y5J6 103 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 FKBP7Q9Y680 259 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 LHFPL6Q9Y693 200 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 CACNG2Q9Y698 323 aa9.09□□□□□ -0.95
CD44-227ENST00000528086 DYSFO75923 2080 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 IQCMA0A1B0GVH7 501 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 OR6C6A6NF89 314 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 ZSCAN5BA6NJL1 495 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 C17orf100A8MU93 164 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 BHLHE40O14503 412 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 RER1O15258 196 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 TLX2O43763 284 aaPredicted RBP9.08□□□□□ -0.96
CD44-227ENST00000528086 SLC16A7O60669 478 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 UBOX5O94941 541 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 GASTP01350 101 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 DBHP09172 617 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 ZNF16P17020 682 aaPredicted RBP9.08□□□□□ -0.96
CD44-227ENST00000528086 ZNF23P17027 643 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 ITGA2P17301 1181 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 CCNOP22674 350 aa9.08□□□□□ -0.96
CD44-227ENST00000528086 CALB2P22676 271 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms