RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 DAZ3Q9NR90 486 aaKnown RBP2.94□□□□□ -1.94
CD44-223ENST00000526553 CHRAC1Q9NRG0 131 aa2.94□□□□□ -1.94
CD44-223ENST00000526553 PDP1Q9P0J1 537 aaPredicted RBP2.94□□□□□ -1.94
CD44-223ENST00000526553 GOLT1BQ9Y3E0 138 aa2.94□□□□□ -1.94
CD44-223ENST00000526553 SAR1BQ9Y6B6 198 aa2.94□□□□□ -1.94
CD44-223ENST00000526553 TMEM2Q9UHN6 1383 aa2.94□□□□□ -1.94
CD44-223ENST00000526553 CDK12Q9NYV4 1490 aaPredicted RBP2.94□□□□□ -1.94
CD44-223ENST00000526553 MBD5Q9P267 1494 aa2.94□□□□□ -1.94
CD44-223ENST00000526553 GCC2Q8IWJ2 1684 aa2.94□□□□□ -1.94
CD44-223ENST00000526553 MROH5Q6ZUA9 1318 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 FGD6Q6ZV73 1430 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 EHBP1L1Q8N3D4 1523 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 EIF2AK4Q9P2K8 1649 aaKnown RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 ARID1AO14497 2285 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 NKTRP30414 1462 aaKnown RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 TRAV39A0A0B4J263 110 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 PSMB11A5LHX3 300 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 A8MUA0 341 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 RSPH10B2B2RC85 870 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 ERVV-1B6SEH8 477 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 H7C0C1 242 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 FAM189A1O60320 539 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 RSPH10BP0C881 870 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CHTF8P0CG12 524 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 MSR1P21757 451 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CD1BP29016 333 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CDKN1BP46527 198 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CLDN18P56856 261 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 ECH1Q13011 328 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 SELENBP1Q13228 472 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CLINT1Q14677 625 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 ANKRD26P1Q6NSI1 321 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CNIH2Q6PI25 160 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 RNF165Q6ZSG1 346 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 ASCL5Q7RTU5 278 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 DEFB132Q7Z7B7 95 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 JAGN1Q8N5M9 183 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 TTC29Q8NA56 475 aaPredicted RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 DCAF4L2Q8NA75 395 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 SLC7A13Q8TCU3 470 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 GPX8Q8TED1 209 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 SRSF12Q8WXF0 261 aaKnown RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 ARPC1AQ92747 370 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 PKNOX2Q96KN3 472 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 JSRP1Q96MG2 331 aaPredicted RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 OSBPL10Q9BXB5 764 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 ANKRD60Q9BZ19 345 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 BLZF1Q9H2G9 400 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 TDRD3Q9H7E2 651 aaKnown RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 NTN4Q9HB63 628 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 HRASLS2Q9NWW9 162 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 MTCH1Q9NZJ7 389 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 CCDC59Q9P031 241 aaKnown RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 CLCF1Q9UBD9 225 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 LGALS13Q9UHV8 139 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 RAB26Q9ULW5 256 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 ING4Q9UNL4 249 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 RLFQ13129 1914 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 AHDC1Q5TGY3 1603 aaPredicted RBP2.93□□□□□ -1.94
CD44-223ENST00000526553 MROH1Q8NDA8 1641 aa2.93□□□□□ -1.94
CD44-223ENST00000526553 TET3O43151 1660 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 ARHGEF5Q12774 1597 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 NWD1Q149M9 1564 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 CNTNAP1P78357 1384 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 GLYATL1P3A0A0U1RQE8 302 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 USP27XA6NNY8 438 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 LYRM9A8MSI8 78 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 EIF3HO15372 352 aaKnown RBP eCLIP2.92□□□□□ -1.94
CD44-223ENST00000526553 EIF4E2O60573 245 aaKnown RBP2.92□□□□□ -1.94
CD44-223ENST00000526553 CLPXO76031 633 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 SUPT7LO94864 414 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 CLIC3O95833 236 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 PRKACAP17612 351 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 BCKDHBP21953 392 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 SERPINB5P36952 375 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 TNFSF9P41273 254 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 RPS5P46782 204 aaKnown RBP2.92□□□□□ -1.94
CD44-223ENST00000526553 CCR8P51685 355 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 NUP107P57740 925 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 KIAA0087Q14695 138 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 NCF4Q15080 339 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 COA6Q5JTJ3 125 aaKnown RBP2.92□□□□□ -1.94
CD44-223ENST00000526553 AGBL2Q5U5Z8 902 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 SPESP1Q6UW49 350 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 RFLNAQ6ZTI6 216 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 CMC1Q7Z7K0 106 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 ZADH2Q8N4Q0 377 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 ZNF433Q8N7K0 673 aaPredicted RBP2.92□□□□□ -1.94
CD44-223ENST00000526553 OR2G3Q8NGZ4 309 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 FANK1Q8TC84 345 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 SDR42E1Q8WUS8 393 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 DCUN1D4Q92564 292 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 ZNF75CPQ92670 426 aaPredicted RBP2.92□□□□□ -1.94
CD44-223ENST00000526553 TMEM54Q969K7 222 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 MED8Q96G25 268 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 OPALINQ96PE5 141 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 BCL7BQ9BQE9 202 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 TEKT3Q9BXF9 490 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 LYRM4Q9HD34 91 aa2.92□□□□□ -1.94
CD44-223ENST00000526553 MTRF1LQ9UGC7 380 aaKnown RBP2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms