RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	ZNF32	P17041	273 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	SLC2A5	P22732	501 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	FMO3	P31513	532 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	PYCR1	P32322	319 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	GGT2	P36268	569 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	IDH3G	P51553	393 aa	Predicted RBP	18.04	■□□□□ 0.48
CD44-222	ENST00000526025	PIGF	Q07326	219 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	ADAM5	Q6NVV9	412 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	UGT2A3	Q6UWM9	527 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	CXXC5	Q7LFL8	322 aa	Known RBP	18.04	■□□□□ 0.48
CD44-222	ENST00000526025	OR10H5	Q8NGA6	315 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	OR8J1	Q8NGP2	316 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	C1QTNF6	Q9BXI9	259 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	VCX	Q9H320	206 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	RNF121	Q9H920	327 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	MARCH7	Q9H992	704 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	EMC7	Q9NPA0	242 aa		18.04	■□□□□ 0.48
CD44-222	ENST00000526025	DLGAP1	O14490	977 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	ABCD4	O14678	606 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	MPZL1	O95297	269 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	PATE4	P0C8F1	98 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	HIST1H3A	P68431	136 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	NAAA	Q02083	359 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	PLP2	Q04941	152 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	PCK2	Q16822	640 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	ZIK1	Q3SY52	487 aa	Predicted RBP	18.03	■□□□□ 0.48
CD44-222	ENST00000526025	TEX30	Q5JUR7	227 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	HIST2H3PS2	Q5TEC6	136 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	HIST2H3A	Q71DI3	136 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	ZNRF4	Q8WWF5	429 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	FOXN4	Q96NZ1	517 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	HS3ST6	Q96QI5	342 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	OR2H1	Q9GZK4	316 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	MED20	Q9H944	212 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	MRPL22	Q9NWU5	206 aa	Known RBP	18.03	■□□□□ 0.48
CD44-222	ENST00000526025	ATPIF1	Q9UII2	106 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	RRP15	Q9Y3B9	282 aa	Known RBP	18.03	■□□□□ 0.48
CD44-222	ENST00000526025	RTTN	Q86VV8	2226 aa		18.03	■□□□□ 0.48
CD44-222	ENST00000526025	HLA-DQA2	P01906	255 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	CRYAA	P02489	173 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	GYPB	P06028	91 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	COX5B	P10606	129 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	CLU	P10909	449 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	PRF1	P14222	555 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	ZNF823	P16415	610 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	PSG4	Q00888	419 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	KEAP1	Q14145	624 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	RAB39A	Q14964	217 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	LRRC36	Q1X8D7	754 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	PABPC1L2A	Q5JQF8	200 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	AADACL4	Q5VUY2	407 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	NXNL2	Q5VZ03	156 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	FBXW10	Q5XX13	1052 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	ZNF704	Q6ZNC4	412 aa	Predicted RBP	18.02	■□□□□ 0.48
CD44-222	ENST00000526025	TMEM200A	Q86VY9	491 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	ZNF584	Q8IVC4	421 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	ALDH16A1	Q8IZ83	802 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	DEPDC4	Q8N2C3	294 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	GALNT4	Q8N4A0	578 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	TCEANC	Q8N8B7	351 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	FAM118A	Q9NWS6	357 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	ASH2L	Q9UBL3	628 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	CYB5R1	Q9UHQ9	305 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	POLR1D	Q9Y2S0	133 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	LHFPL6	Q9Y693	200 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	COMMD3-BMI1	R4GMX3	469 aa		18.02	■□□□□ 0.48
CD44-222	ENST00000526025	APC	P25054	2843 aa		18.02	■□□□□ 0.47
CD44-222	ENST00000526025	IQCM	A0A1B0GVH7	501 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	FAM171A2	A8MVW0	826 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025		H0YJX3	145 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	TLX2	O43763	284 aa	Predicted RBP	18.01	■□□□□ 0.47
CD44-222	ENST00000526025	GPANK1	O95872	356 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	CELA3B	P08861	270 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	ENTPD1	P49961	510 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	SLC25A30	Q5SVS4	291 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	LCN1P1	Q5VSP4	162 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	CDC20B	Q86Y33	519 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	GID4	Q8IVV7	300 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	GJC3	Q8NFK1	279 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	OR51L1	Q8NGJ5	315 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	OR1J2	Q8NGS2	313 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	OR6K6	Q8NGW6	343 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	OTULIN	Q96BN8	352 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	KCNS3	Q9BQ31	491 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	WNT5B	Q9H1J7	359 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	OR51V1	Q9H2C8	321 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	IMPAD1	Q9NX62	359 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	GMPPB	Q9Y5P6	360 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	ITPR2	Q14571	2701 aa		18.01	■□□□□ 0.47
CD44-222	ENST00000526025	IGHV2OR16-5	A0A0B4J2B6	119 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	LOC100130705	A0A1B0GUX0	176 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	SHISA9	B4DS77	424 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	TMCC2	O75069	709 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	GSTT1	P30711	240 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	SNRPG	P62308	76 aa	Known RBP	18	■□□□□ 0.47
CD44-222	ENST00000526025	ADAM8	P78325	824 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	MEP1B	Q16820	701 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	SLC18B1	Q6NT16	456 aa		18	■□□□□ 0.47
CD44-222	ENST00000526025	MYPOP	Q86VE0	399 aa	Predicted RBP	18	■□□□□ 0.47
CD44-222	ENST00000526025	ZNF555	Q8NEP9	628 aa		18	■□□□□ 0.47

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