RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 WNT11O96014 354 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 HRGP04196 525 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 MSR1P21757 451 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 NAA10P41227 235 aaPredicted RBP13.38□□□□□ -0.27
LSM1-203ENST00000520755 CENPAP49450 140 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 MED21Q13503 144 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 PPA1Q15181 289 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 TBRG1Q3YBR2 411 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 TIMM23BQ5SRD1 257 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 LCN1P1Q5VSP4 162 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 KRT80Q6KB66 452 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 ANKRD16Q6P6B7 361 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 ZNF813Q6ZN06 617 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.38□□□□□ -0.27
LSM1-203ENST00000520755 C17orf78Q8N4C9 275 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 SLC22A24Q8N4F4 322 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 RFLNBQ8N5W9 214 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 FGFBP3Q8TAT2 258 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 SMAP2Q8WU79 429 aaPredicted RBP13.38□□□□□ -0.27
LSM1-203ENST00000520755 HSD17B8Q92506 261 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 SGCDQ92629 289 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 BCL2L2Q92843 193 aaPredicted RBP13.38□□□□□ -0.27
LSM1-203ENST00000520755 RFKQ969G6 155 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 MUCL1Q96DR8 90 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 RNFT2Q96EX2 444 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 BOD1Q96IK1 185 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 Q96MT0 163 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 USB1Q9BQ65 265 aaKnown RBP13.38□□□□□ -0.27
LSM1-203ENST00000520755 ZNF416Q9BWM5 594 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 SEC61A2Q9H9S3 476 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 NOX3Q9HBY0 568 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 SLC17A5Q9NRA2 495 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 FKBP14Q9NWM8 211 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 PAK1IP1Q9NWT1 392 aaPredicted RBP13.38□□□□□ -0.27
LSM1-203ENST00000520755 KCNN3Q9UGI6 736 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.38□□□□□ -0.27
LSM1-203ENST00000520755 LRCH1Q9Y2L9 728 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 LHFPL6Q9Y693 200 aa13.38□□□□□ -0.27
LSM1-203ENST00000520755 PKDREJQ9NTG1 2253 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 J3QRE1 110 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 SBK2P0C263 348 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 CAPZA2P47755 286 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 MTNR1AP48039 350 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 CXCR4P61073 352 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 UBE2NP61088 152 aaKnown RBP13.37□□□□□ -0.27
LSM1-203ENST00000520755 TUBA1BP68363 451 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 TUBA4AP68366 448 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 TMED1Q13445 227 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 PCK2Q16822 640 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 NRN1LQ496H8 165 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 TUBA1AQ71U36 451 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 P2RY8Q86VZ1 359 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 ERI1Q8IV48 349 aaKnown RBP13.37□□□□□ -0.27
LSM1-203ENST00000520755 SKA3Q8IX90 412 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 WDR31Q8NA23 367 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 BPIFB6Q8NFQ5 453 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 OR4F15Q8NGB8 312 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 OR51G2Q8NGK0 314 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 MARVELD3Q96A59 401 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 LGALS12Q96DT0 336 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 INTS14Q96SY0 518 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 CNN2Q99439 309 aaKnown RBP13.37□□□□□ -0.27
LSM1-203ENST00000520755 SH3GL3Q99963 347 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 PLCXD1Q9NUJ7 323 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 MRPS18AQ9NVS2 196 aaKnown RBP13.37□□□□□ -0.27
LSM1-203ENST00000520755 H2AFY2Q9P0M6 372 aaPredicted RBP13.37□□□□□ -0.27
LSM1-203ENST00000520755 KLHDC2Q9Y2U9 406 aa13.37□□□□□ -0.27
LSM1-203ENST00000520755 PRR32B1ATL7 298 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 FAM20BO75063 409 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 HLA-DQA2P01906 255 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 NPR2P20594 1047 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 CRHBPP24387 322 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 ENTPD1P49961 510 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 BLVRAP53004 296 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 ADAM8P78325 824 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 SGCAQ16586 387 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 FAM27BQ5VT28 67 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 LINC00346Q8IVM7 164 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 ZNF786Q8N393 782 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 LRRC18Q8N456 261 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 OR52I1Q8NGK6 324 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 OR6N2Q8NGY6 317 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 GGHQ92820 318 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 FBXO17Q96EF6 278 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 AMELYQ99218 206 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 C1QTNF6Q9BXI9 259 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 SIAEQ9HAT2 523 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 PSORS1C1Q9UIG5 152 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 KCNG2Q9UJ96 466 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 COPS3Q9UNS2 423 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 EXOGQ9Y2C4 368 aaKnown RBP13.36□□□□□ -0.27
LSM1-203ENST00000520755 AMDHD2Q9Y303 409 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 RPL36Q9Y3U8 105 aaKnown RBP13.36□□□□□ -0.27
LSM1-203ENST00000520755 SLC25A15Q9Y619 301 aa13.36□□□□□ -0.27
LSM1-203ENST00000520755 MMP7P09237 267 aaPredicted RBP13.35□□□□□ -0.27
LSM1-203ENST00000520755 SPARCP09486 303 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 CCDC159P0C7I6 412 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 PATE4P0C8F1 98 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 OR8G3PP0DMU2 310 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 CRYGSP22914 178 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms