RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 GDPD1Q8N9F7 314 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 KBTBD8Q8NFY9 601 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 RND1Q92730 232 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 LGALS12Q96DT0 336 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 VSTM2LQ96N03 204 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 MUS81Q96NY9 551 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 MS4A4EQ96PG1 132 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF559Q9BR84 538 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 ALG2Q9H553 416 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 SMURF2Q9HAU4 748 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 TPT1P8Q9HAU6 139 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 DUSP22Q9NRW4 184 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 KLHL28Q9NXS3 571 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 NLKQ9UBE8 527 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 FIGNL2A6NMB9 653 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 J3KRW8 73 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 KLF11O14901 512 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 RGS11O94810 467 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 CNOT4O95628 575 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 IL2RAP01589 272 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 CRYBA1P05813 215 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 FASP25445 335 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 POLR2IP36954 125 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 DCTP40126 519 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 TSFMP43897 325 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 AP3S2P59780 193 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 SCN1BQ07699 218 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 MAP4K2Q12851 820 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 FOXF2Q12947 444 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 VEZF1Q14119 521 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 ARHGAP11BQ3KRB8 267 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 LPCAT3Q6P1A2 487 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 CYP4Z1Q86W10 505 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 OR10A6Q8NH74 314 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 NFKBIDQ8NI38 313 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 GPR137Q96N19 417 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 TMEM109Q9BVC6 243 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 NKIRAS2Q9NYR9 191 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 EXTL2Q9UBQ6 330 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 GPR160Q9UJ42 338 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 OAZ3Q9UMX2 235 aa7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 C19orf53Q9UNZ5 99 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 CHTOPQ9Y3Y2 248 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-219ENST00000514096 METTL15A6NJ78 407 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 C19orf84I3L1E1 186 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CLIC1O00299 241 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 AQP7O14520 342 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ADAMDEC1O15204 470 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SCELO95171 688 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 OR4E1P0C645 316 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 GAAP10253 952 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 BMP7P18075 431 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 KLK2P20151 261 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 BDKRB2P30411 391 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 LCN1P31025 176 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SERPINF1P36955 418 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 NUDT6P53370 316 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CLDN8P56748 225 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 PDZK1IP1Q13113 114 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 DYRK1AQ13627 763 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 MAPK14Q16539 360 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 TATDN3Q17R31 274 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 GLYR1Q49A26 553 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 FAM69AQ5T7M9 428 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SP5Q6BEB4 398 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF773Q6PK81 442 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ENPP6Q6UWR7 440 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CARM1Q86X55 608 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SVOPLQ8N434 492 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 MEIOBQ8N635 442 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CDRT4Q8N9R6 151 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ACBD4Q8NC06 268 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF555Q8NEP9 628 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 HSD17B8Q92506 261 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC38A4Q969I6 547 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 TRMT61AQ96FX7 289 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 LRR1Q96L50 414 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 NDRG3Q9UGV2 375 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ACTL7BQ9Y614 415 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 KIAA1549Q9HCM3 1950 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF99A8MXY4 864 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 AIREO43918 545 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SNRPCP09234 159 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 DHRS4L1P0CG22 281 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ACAA2P42765 397 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 OR1E2P47887 323 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 IDH2P48735 452 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 OR2B8PP59922 312 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 MLC1Q15049 377 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ACSM5Q6NUN0 579 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 METAP1DQ6UB28 335 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 LRRN1Q6UXK5 716 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 GLCCI1Q86VQ1 547 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ADGRG3Q86Y34 549 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 MFSD4AQ8N468 514 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF454Q8N9F8 522 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CNOT9Q92600 299 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SARAFQ96BY9 339 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 DCLRE1CQ96SD1 692 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CHODLQ9H9P2 273 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms