RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ART1P52961 327 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 MLF1P58340 268 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 RPS15P62841 145 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 ZFP69Q49AA0 526 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 CORO6Q6QEF8 472 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 GPAT4Q86UL3 456 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 RPS19BP1Q86WX3 136 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 GTPBP8Q8N3Z3 284 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 NOXO1Q8NFA2 376 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 PLEKHA1Q9HB21 404 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 RANGRFQ9HD47 186 aaPredicted RBP18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 DDX28Q9NUL7 540 aaKnown RBP18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 DHDHQ9UQ10 334 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 ATP6V1G1O75348 118 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 PGA4P0DJD7 388 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 PGA3P0DJD8 388 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 GDNFP39905 211 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 PTH2RP49190 550 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 RAB25P57735 213 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 THEM4Q5T1C6 240 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 ASB5Q8WWX0 329 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 DPAGT1Q9H3H5 408 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 G6PC2Q9NQR9 355 aa18.82■□□□□ 0.6
CCDC88B-208ENST00000492980 RAMP1O60894 148 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 IGHEP01854 428 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 KLK2P20151 261 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 SCAND1P57086 179 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 CLRN1P58418 232 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 CAMK2DQ13557 499 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF528Q3MIS6 628 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 DEGS2Q6QHC5 323 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 PPP1R32Q7Z5V6 425 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 ARMC10Q8N2F6 343 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 RNF133Q8WVZ7 376 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 GCDHQ92947 438 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 SLC25A44Q96H78 314 aaPredicted RBP18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 OXGR1Q96P68 337 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 FYTTD1Q96QD9 318 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 C7orf50Q9BRJ6 194 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 BEX2Q9BXY8 128 aa18.81■□□□□ 0.6
CCDC88B-208ENST00000492980 SULT1B1O43704 296 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 IGHG1P01857 330 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 LIFP15018 202 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 CDK2P24941 298 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 RPS18P62269 152 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 PLA2G7Q13093 441 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 TMEM69Q5SWH9 247 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 TMEM156Q8N614 296 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 OR10H5Q8NGA6 315 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 OR52A1Q9UKL2 312 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 AQP7P3A6NL99 342 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 TTLL8A6PVC2 850 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 GABARAPH6UMI1 98 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 LAP3P28838 519 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 CD83Q01151 205 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 DYRK1AQ13627 763 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 SLC22A10Q63ZE4 541 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 TMEM225Q6GV28 225 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 UTS2BQ765I0 119 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 OR52I2Q8NH67 350 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 GNRHR2Q96P88 292 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 HPF1Q9NWY4 346 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 CYB5R1Q9UHQ9 305 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 PADI1Q9ULC6 663 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 CFAP54Q96N23 3096 aa18.8■□□□□ 0.6
CCDC88B-208ENST00000492980 PMS2P1A4D2B8 440 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 G3V3Y1 287 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 SULT2B1O00204 365 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 ISG15P05161 165 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 H2BFMP0C1H6 154 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 MNDAP41218 407 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 GPR85P60893 370 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 SLC35A1P78382 337 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 LRFN4Q6PJG9 635 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 TMPPEQ6ZT21 453 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 OR6X1Q8NH79 312 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 CENPMQ9NSP4 180 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 TCFL5Q9UL49 500 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 NUBP2Q9Y5Y2 271 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 TMEM269A0A1B0GVZ9 245 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 A0A1W2PPL8 197 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 LNP1A1A4G5 178 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 EIF1AYO14602 144 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 MT-ND4P03905 459 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 ITGA5P08648 1049 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 TMIGD3P0DMS9 266 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 ACHEP22303 614 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 GIFP27352 417 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 DSCR4P56555 118 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 ZNF468Q5VIY5 522 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 TIPARPQ7Z3E1 657 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 HDDC2Q7Z4H3 204 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 SLAMF6Q96DU3 332 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 NUDT15Q9NV35 164 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 HHLA2Q9UM44 414 aa18.79■□□□□ 0.6
CCDC88B-208ENST00000492980 LOC102725191A0A1B0GVB3 256 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 LOC107986453A0A1B0GWG9 222 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 DOK2O60496 412 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 KRT33AO76009 404 aa18.78■□□□□ 0.6
CCDC88B-208ENST00000492980 PMS2P2O95744 297 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms