RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TIMM10BQ9Y5J6 103 aa14.08□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 MPZL1O95297 269 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 IFNGP01579 166 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GAAP10253 952 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZNF23P17027 643 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 NR4A1P22736 598 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 APEX1P27695 318 aaKnown RBP14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 POU1F1P28069 291 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GRK5P34947 590 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 THBS4P35443 961 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CDKN1AP38936 164 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 NKX6-1P78426 367 aaPredicted RBP14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GLO1Q04760 184 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SCRN3Q0VDG4 424 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 AQP6Q13520 282 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ADIPOQQ15848 244 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 KCNMB1Q16558 191 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZNF362Q5T0B9 420 aaPredicted RBP14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 FAHD1Q6P587 224 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SPNS3Q6ZMD2 512 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZBTB46Q86UZ6 589 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 IQCF1Q8N6M8 205 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CPEB3Q8NE35 698 aaKnown RBP14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 AKR7LQ8NHP1 331 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 PYDC1Q8WXC3 89 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 TRMT61AQ96FX7 289 aaKnown RBP14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 DDOQ99489 341 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CACNG6Q9BXT2 260 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 POLR1DQ9Y2S0 133 aa14.07□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 HEATR1Q9H583 2144 aaKnown RBP14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 RIIAD1A6NNX1 92 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 VSTM5A8MXK1 200 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 G3V2T6 193 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SNAP29O95721 258 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GPANK1O95872 356 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 OR4A8P0C604 315 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CCL2P13500 99 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZNF3P17036 446 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 STOMP27105 288 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SERPINF1P36955 418 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 DAPP51397 102 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 DBPQ10586 325 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CRMP1Q14194 572 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SHEQ5VZ18 495 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 OTPQ5XKR4 325 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SLC27A4Q6P1M0 643 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZFP1Q6P2D0 407 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZDHHC13Q8IUH4 622 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ALDH16A1Q8IZ83 802 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SVOPLQ8N434 492 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 PAQR4Q8N4S7 273 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 OR2T4Q8NH00 348 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 PAPOLBQ9NRJ5 636 aaKnown RBP14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CMC2Q9NRP2 79 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ROS1P08922 2347 aa14.06□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 FAM171A2A8MVW0 826 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GPRIN2O60269 458 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 DOK2O60496 412 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GDI2P50395 445 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ATP5J2P56134 94 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 RPS23P62266 143 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GINS1Q14691 196 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 EFNB3Q15768 340 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 MEP1BQ16820 701 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ZNF774Q6NX45 483 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 KRTAP1-3Q8IUG1 177 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 C10orf67Q8IYJ2 551 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 PROKR2Q8NFJ6 384 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SLC26A10Q8NG04 563 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 OR10H5Q8NGA6 315 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CENPNQ96H22 339 aaPredicted RBP14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 POM121L2Q96KW2 1035 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 RBM4Q9BWF3 364 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GABARAPL1Q9H0R8 117 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SEMA6AQ9H2E6 1030 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ASH2LQ9UBL3 628 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CMAHPQ9Y471 501 aa14.05□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 C5orf49A4QMS7 147 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 B9A039 149 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SGCEO43556 437 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 HLA-DQA2P01906 255 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 TFP02787 698 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 COX5BP10606 129 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 BMP4P12644 408 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CCNOP22674 350 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 PYCR1P32322 319 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 GLRXP35754 106 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SLC25A1P53007 311 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SNRPD2P62316 118 aaKnown RBP14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 CDK5Q00535 292 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 TEKQ02763 1124 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 SWI5Q1ZZU3 235 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 MST1LQ2TV78 715 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 Q5PR19 223 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 ACSM5Q6NUN0 579 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 PARP8Q8N3A8 854 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 OR9Q1Q8NGQ5 310 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 NMNAT2Q9BZQ4 307 aa14.04□□□□□ -0.16
MSH5-SAPCD1-206ENST00000491552 KRT84Q9NSB2 600 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms