RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 OR52M1Q8NGK5 317 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 OR10R2Q8NGX6 335 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 RSPH1Q8WYR4 309 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 STMN2Q93045 179 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 TMEM43Q9BTV4 400 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 HYOU1Q9Y4L1 999 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 SHROOM3Q8TF72 1996 aa1.95□□□□□ -2.1
PTPN4-212ENST00000488896 ITGB4P16144 1822 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 A0A1W2PNN7 141 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 ZNF98A6NK75 572 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 H0YJW9 148 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 SOX15O60248 233 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 MTX2O75431 263 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 FGGP02679 453 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 RAB3BP20337 219 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 PRMT2P55345 433 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 RBX1P62877 108 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 ACTG2P63267 376 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 TWF1Q12792 350 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 CDH17Q12864 832 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 TAF7Q15545 349 aaPredicted RBP1.94□□□□□ -2.1
PTPN4-212ENST00000488896 METTL13Q8N6R0 699 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 C1orf64Q8NEQ6 169 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 OR5M1Q8NGP8 315 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 OR10J6PQ8NGY7 276 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 C17orf50Q8WW18 174 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 SHANK2-AS3Q9BTD1 123 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 ANGPTL4Q9BY76 406 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 ANKRD19PQ9H560 264 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 DHX35Q9H5Z1 703 aaKnown RBP1.94□□□□□ -2.1
PTPN4-212ENST00000488896 GORASP2Q9H8Y8 452 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 SAMSN1Q9NSI8 373 aaKnown RBP1.94□□□□□ -2.1
PTPN4-212ENST00000488896 CRCT1Q9UGL9 99 aa1.94□□□□□ -2.1
PTPN4-212ENST00000488896 NLRC5Q86WI3 1866 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 IGHV1OR15-9A0A0B4J2B8 117 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 DYNC1I1O14576 645 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 MRPS12O15235 138 aaKnown RBP1.93□□□□□ -2.1
PTPN4-212ENST00000488896 ZNF208O43345 1280 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 DPM1O60762 260 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 SPAG6O75602 509 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 GLAP06280 429 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 OR8U9P0C7N5 309 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 ZNF688P0C7X2 276 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 CEACAM3P40198 252 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 TNFSF9P41273 254 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 CCNG1P51959 295 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 UBE2NP61088 152 aaKnown RBP1.93□□□□□ -2.1
PTPN4-212ENST00000488896 RPS11P62280 158 aaKnown RBP eCLIP1.93□□□□□ -2.1
PTPN4-212ENST00000488896 PPIL2Q13356 520 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 PDK3Q15120 406 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 ZNF77Q15935 545 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 PMF1Q6P1K2 205 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 SLC16A13Q7RTY0 426 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 CDKL3Q8IVW4 592 aaPredicted RBP1.93□□□□□ -2.1
PTPN4-212ENST00000488896 TMEM256Q8N2U0 113 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 OR1L4Q8NGR5 311 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 OR6N1Q8NGY5 312 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 NTAN1Q96AB6 310 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 TRIM44Q96DX7 344 aaPredicted RBP1.93□□□□□ -2.1
PTPN4-212ENST00000488896 CNDP1Q96KN2 507 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 IFT74Q96LB3 600 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 TCEANC2Q96MN5 208 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 ST3GAL6Q9Y274 331 aa1.93□□□□□ -2.1
PTPN4-212ENST00000488896 SDK2Q58EX2 2172 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 IGHV3OR16-8A0A075B7F1 116 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 C15orf38-AP3S2A0A0A6YYH1 394 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 CENPVL3A0A0U1RRI6 287 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 ZNF878C9JN71 531 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 SOCS1O15524 211 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 PSTPIP1O43586 416 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 TIMM8AO60220 97 aaPredicted RBP1.92□□□□□ -2.1
PTPN4-212ENST00000488896 PTMAP06454 111 aaKnown RBP1.92□□□□□ -2.1
PTPN4-212ENST00000488896 CCNB1P14635 433 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 GLRA2P23416 452 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 IL24Q13007 206 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 PSTKQ8IV42 348 aaKnown RBP1.92□□□□□ -2.1
PTPN4-212ENST00000488896 CXorf40AQ8TE69 158 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 SLC41A3Q96GZ6 507 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 SERPINB12Q96P63 405 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 FRMD8P1Q9BZ68 369 aaPredicted RBP1.92□□□□□ -2.1
PTPN4-212ENST00000488896 VCX2Q9H322 139 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 C1orf198Q9H425 327 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 TRMT112Q9UI30 125 aaKnown RBP1.92□□□□□ -2.1
PTPN4-212ENST00000488896 CLEC4AQ9UMR7 237 aa1.92□□□□□ -2.1
PTPN4-212ENST00000488896 DDX49Q9Y6V7 483 aaKnown RBP1.92□□□□□ -2.1
PTPN4-212ENST00000488896 LTBP4Q8N2S1 1624 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 ZNF816-ZNF321PA0A0X1KG74 233 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 SNTNA6NMZ2 147 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 GPR89AB7ZAQ6 455 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 HAS3O00219 553 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 GPR89BP0CG08 455 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 LGALS3P17931 250 aaKnown RBP1.91□□□□□ -2.1
PTPN4-212ENST00000488896 SSR1P43307 286 aaKnown RBP1.91□□□□□ -2.1
PTPN4-212ENST00000488896 HNMTP50135 292 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 ARFIP1P53367 373 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 FUT5Q11128 374 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 CHIT1Q13231 466 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 GPM6BQ13491 265 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 RCAN2Q14206 197 aa1.91□□□□□ -2.1
PTPN4-212ENST00000488896 LRRC75A-AS1Q8N1F1 130 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms