RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 OR5T3Q8NGG3 340 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 OR10J6PQ8NGY7 276 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 OR6X1Q8NH79 312 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 ACER1Q8TDN7 264 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 GIMAP1Q8WWP7 306 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 CIDECQ96AQ7 238 aaPredicted RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 SEH1LQ96EE3 360 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 OR2M2Q96R28 347 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 OR2AG1Q9H205 316 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 LINC00597Q9H2U6 94 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 CLMPQ9H6B4 373 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 XKR8Q9H6D3 395 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 TMEM38AQ9H6F2 299 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 CD209Q9NNX6 404 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 ACP6Q9NPH0 428 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 KCNJ16Q9NPI9 418 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 SLC25A37Q9NYZ2 338 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 DUX4Q9UBX2 424 aa3.56□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF629Q9UEG4 869 aaPredicted RBP3.56□□□□□ -1.84
UPF3B-203ENST00000478840 PDS5BQ9NTI5 1447 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 ADGRA3Q8IWK6 1321 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 TRAV6A0A075B6T7 132 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 CYSRT1A8MQ03 144 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 SLC9A3R1O14745 358 aaPredicted RBP3.55□□□□□ -1.84
UPF3B-203ENST00000478840 RAD51CO43502 376 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 TRAF3IP2O43734 574 aaPredicted RBP3.55□□□□□ -1.84
UPF3B-203ENST00000478840 FLOT1O75955 427 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 TGM6O95932 706 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 OXTP01178 125 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 BGLAPP02818 100 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 ARG1P05089 322 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 IGHV4-34P06331 123 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 STAG3L2P0CL84 134 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 CCNG1P51959 295 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 NCBP2P52298 156 aaKnown RBP eCLIP3.55□□□□□ -1.84
UPF3B-203ENST00000478840 KRTAP27-1Q3LI81 207 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 ULK3Q6PHR2 472 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF621Q6ZSS3 439 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 CAMK2N1Q7Z7J9 78 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 CBLN2Q8IUK8 224 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 MREGQ8N565 214 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 DCAF4L2Q8NA75 395 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 OR4S2Q8NH73 311 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 EEF1AKMT3Q96AZ1 226 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 FAM3DQ96BQ1 224 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 COL21A1Q96P44 957 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 NRTNQ99748 197 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 DEFB129Q9H1M3 183 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 ZC4H2Q9NQZ6 224 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 DYRK4Q9NR20 520 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 AGPAT4Q9NRZ5 378 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF226Q9NYT6 803 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 IL17CQ9P0M4 197 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 TRAPPC4Q9Y296 219 aa3.55□□□□□ -1.84
UPF3B-203ENST00000478840 PES1O00541 588 aaKnown RBP3.54□□□□□ -1.84
UPF3B-203ENST00000478840 HAT1O14929 419 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 XRCC2O43543 280 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 FARS2O95363 451 aaKnown RBP3.54□□□□□ -1.84
UPF3B-203ENST00000478840 KLF8O95600 359 aaPredicted RBP3.54□□□□□ -1.84
UPF3B-203ENST00000478840 RAB3DO95716 219 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 INSP01308 110 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 NR2C1P13056 603 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF30P17039 623 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 RAB4AP20338 218 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 F2RP25116 425 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 NUDT1P36639 197 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 GPR1P46091 355 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 SEMG2Q02383 582 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF33AQ06730 810 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 TTLL9Q3SXZ7 439 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 GPR107Q5VW38 600 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 MLIPQ5VWP3 458 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 ABHD13Q7L211 337 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 MYOCDQ8IZQ8 938 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 STPG2Q8N412 459 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 FAM71E2Q8N5Q1 922 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 CD300LFQ8TDQ1 290 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 C19orf60Q96EN9 201 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 TMEM175Q9BSA9 504 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 BEX1Q9HBH7 125 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 TMEM9BQ9NQ34 198 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 LZTFL1Q9NQ48 299 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF282Q9UDV7 671 aaPredicted RBP3.54□□□□□ -1.84
UPF3B-203ENST00000478840 NUFIP1Q9UHK0 495 aaKnown RBP3.54□□□□□ -1.84
UPF3B-203ENST00000478840 TP53TG5Q9Y2B4 290 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 YARS2Q9Y2Z4 477 aaKnown RBP3.54□□□□□ -1.84
UPF3B-203ENST00000478840 HEBP2Q9Y5Z4 205 aa3.54□□□□□ -1.84
UPF3B-203ENST00000478840 PRSS37A4D1T9 235 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 NDUFS8O00217 210 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 ERI3O43414 337 aaKnown RBP3.53□□□□□ -1.84
UPF3B-203ENST00000478840 KDELR3O43731 214 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 MBP02144 154 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 ATF6P18850 670 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 OMGP23515 440 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 CFHR2P36980 270 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 NUP62P37198 522 aaPredicted RBP3.53□□□□□ -1.84
UPF3B-203ENST00000478840 RFC3P40938 356 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 TAF6P49848 677 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 RND2P52198 227 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 IFT88Q13099 833 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms