RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 AGAP6Q5VW22 663 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 FAHD1Q6P587 224 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC25A47Q6Q0C1 308 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC22A25Q6T423 547 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF813Q6ZN06 617 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 PTCHD4Q6ZW05 846 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 ZDHHC13Q8IUH4 622 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 PIAS4Q8N2W9 510 aaPredicted RBP10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 TEX47Q8TBZ9 253 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 FAM168AQ92567 244 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 RBP7Q96R05 134 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 PKP2Q99959 881 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 GABARAPL1Q9H0R8 117 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 SEMA6AQ9H2E6 1030 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 HEATR1Q9H583 2144 aaKnown RBP10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 S100A14Q9HCY8 104 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 TMEM38BQ9NVV0 291 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 KIF17Q9P2E2 1029 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 REV1Q9UBZ9 1251 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 BAIAP2Q9UQB8 552 aa10.32□□□□□ -0.76
SQSTM1-206ENST00000466342 IGKV1D-43A0A0B4J1Z2 117 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC22A23A1A5C7 686 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 ANKRD65E5RJM6 399 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 H3BN98 237 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 M0R1B8 84 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 IGFBP1P08833 259 aaPredicted RBP10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 OSMP13725 252 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 CDKN2AP42771 156 aaKnown RBP10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 DAPP51397 102 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC36A3Q495N2 470 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 JAZF1Q86VZ6 243 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 CCDC36Q8IYA8 594 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 LNX2Q8N448 690 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC22A24Q8N4F4 322 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 OR2T33Q8NG76 320 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 ZFAND2BQ8WV99 257 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 STMN2Q93045 179 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 SNX18Q96RF0 628 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 DHRS9Q9BPW9 319 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 TSSK6Q9BXA6 273 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 VSX1Q9NZR4 365 aaPredicted RBP10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 POU2F3Q9UKI9 436 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 OAZ3Q9UMX2 235 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 UGT2A1Q9Y4X1 527 aa10.31□□□□□ -0.76
SQSTM1-206ENST00000466342 SAC3D1A6NKF1 404 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 E7EQL1 145 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 MGRN1O60291 552 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 FARS2O95363 451 aaKnown RBP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 OR8G3PP0DMU2 310 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 HIST1H1CP16403 213 aaKnown RBP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 TTKP33981 857 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 TUBA1BP68363 451 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 TUBA4AP68366 448 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 MRPS34P82930 218 aaKnown RBP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 HIST2H2BDQ6DRA6 164 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF544Q6NX49 715 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 LEG1Q6P5S2 330 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 FOXL2NBQ6ZUU3 175 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 TUBA1AQ71U36 451 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 FBXL14Q8N1E6 418 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 PARP8Q8N3A8 854 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF525Q8N782 197 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 ICA1LQ8NDH6 482 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 SDR9C7Q8NEX9 313 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 OR4Q3Q8NH05 313 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 OR4K13Q8NH42 304 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 C10orf105Q8TEF2 133 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 NSMAFQ92636 917 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 MSI2Q96DH6 328 aaKnown RBP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 C1QTNF6Q9BXI9 259 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 SYT4Q9H2B2 425 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 MOV10Q9HCE1 1003 aaKnown RBP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 PAPOLBQ9NRJ5 636 aaKnown RBP10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 CBLN4Q9NTU7 201 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF224Q9NZL3 707 aa10.3□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF503-AS2A6NEH8 195 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 RENP00797 406 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 CTLA4P16410 223 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 NPR2P20594 1047 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 CDAP32320 146 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 GRK5P34947 590 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 CAPZA2P47755 286 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 FABP6P51161 128 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 RAB35Q15286 201 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 PRR31Q5SQ13 230 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC35F1Q5T1Q4 408 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 KDM4DQ6B0I6 523 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC27A4Q6P1M0 643 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 DNM1P34Q6PK57 102 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 PQLC1Q8N2U9 271 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 MUC15Q8N387 334 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 FAM169BQ8N8A8 192 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 OR52E2Q8NGJ4 325 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 HTRA1Q92743 480 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 NABP1Q96AH0 204 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 NMNAT3Q96T66 252 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 OSBPL10Q9BXB5 764 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 NUAK2Q9H093 628 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 KRT84Q9NSB2 600 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms