RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 IFI30P13284 250 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 ADRA2CP18825 462 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 OR1E2P47887 323 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 MMP15P51511 669 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 CTXN1P60606 82 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 LCN2P80188 198 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 TNFAIP6P98066 277 aaPredicted RBP13.06□□□□□ -0.32
SKA3-204ENST00000462482 COQ5Q5HYK3 327 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 SLC25A47Q6Q0C1 308 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 PCYOX1LQ8NBM8 494 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 LRRC58Q96CX6 371 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 NMD3Q96D46 503 aaKnown RBP13.06□□□□□ -0.32
SKA3-204ENST00000462482 BPIFA2Q96DR5 249 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 TPD52L3Q96J77 140 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 NDEL1Q9GZM8 345 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 GID8Q9NWU2 228 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 HIF3AQ9Y2N7 669 aa13.06□□□□□ -0.32
SKA3-204ENST00000462482 ZSCAN5BA6NJL1 495 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 BBIP1A8MTZ0 92 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 EDF1O60869 148 aaKnown RBP13.05□□□□□ -0.32
SKA3-204ENST00000462482 UBOX5O94941 541 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 PRSS23O95084 383 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 ADH4P08319 380 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 TSPAN19P0C672 248 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 TROVE2P10155 538 aaKnown RBP eCLIP13.05□□□□□ -0.32
SKA3-204ENST00000462482 TNFRSF1AP19438 455 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 MSR1P21757 451 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 TUBG1P23258 451 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 CRYBA2P53672 197 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 ANKDD1AQ495B1 522 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 CYBRD1Q53TN4 286 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 MTX3Q5HYI7 312 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 RFPL4BQ6ZWI9 263 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 CALHM3Q86XJ0 350 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 KLHL36Q8N4N3 616 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 SPICQ8N5J4 248 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 NPEPL1Q8NDH3 523 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 C4orf45Q96LM5 186 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 WACQ9BTA9 647 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 WNT5BQ9H1J7 359 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 TUBG2Q9NRH3 451 aa13.05□□□□□ -0.32
SKA3-204ENST00000462482 IGKV1D-43A0A0B4J1Z2 117 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 FBP2O00757 339 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 SURF4O15260 269 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 ABHD16AO95870 558 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 CD55P08174 381 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 SBK2P0C263 348 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 KDELR2P33947 212 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 SCRN3Q0VDG4 424 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 ARMCX4Q5H9R4 360 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 ZNF774Q6NX45 483 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 SYT9Q86SS6 491 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 OAFQ86UD1 273 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 OR51A7Q8NH64 312 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 C10orf82Q8WW14 230 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 GEMIN6Q8WXD5 167 aaKnown RBP13.04□□□□□ -0.32
SKA3-204ENST00000462482 PRRC1Q96M27 445 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 DCLRE1CQ96SD1 692 aaKnown RBP13.04□□□□□ -0.32
SKA3-204ENST00000462482 FNDC11Q9BVV2 318 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 TMEM120AQ9BXJ8 343 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 MSL2Q9HCI7 577 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 MAN2C1Q9NTJ4 1040 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 NPTNQ9Y639 398 aa13.04□□□□□ -0.32
SKA3-204ENST00000462482 PPIAL4EA0A075B759 164 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 PPIAL4CA0A0B4J2A2 164 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 EFCAB9A8MZ26 197 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 PPIAL4DF5H284 164 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 XKRYO14609 159 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 PIP5K1CO60331 668 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 ICMTO60725 284 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 NGFP01138 241 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 IGHMP01871 453 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 IFNW1P05000 195 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 PPIAL4FP0DN26 164 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 RPL4P36578 427 aaKnown RBP13.03□□□□□ -0.32
SKA3-204ENST00000462482 RRM2BQ7LG56 351 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 HDXQ7Z353 690 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 IGFN1Q86VF2 1251 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 OR2T12Q8NG77 320 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 C22orf15Q8WYQ4 148 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 POP5Q969H6 163 aaKnown RBP13.03□□□□□ -0.32
SKA3-204ENST00000462482 COG8Q96MW5 612 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 ZNF583Q96ND8 569 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 GPA33Q99795 319 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 GRHPRQ9UBQ7 328 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 AP3M1Q9Y2T2 418 aa13.03□□□□□ -0.32
SKA3-204ENST00000462482 FAM220BPB1ANY3 271 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 COX5BP10606 129 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 HTR5AP47898 357 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 SLC9A3P48764 834 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 SELENOWP63302 87 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 FOXL1Q12952 345 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 TRAM2Q15035 370 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 NRMQ8IXM6 262 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 MICU2Q8IYU8 434 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 OR2Z1Q8NG97 314 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 SAMD8Q96LT4 415 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 MRI1Q9BV20 369 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 TMEM106BQ9NUM4 274 aa13.02□□□□□ -0.33
SKA3-204ENST00000462482 TBCCD1Q9NVR7 557 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms