RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 LIMS1P48059 325 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 SLC3A1Q07837 685 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 TAF11Q15544 211 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 METTL21CQ5VZV1 264 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 ERICH5Q6P6B1 374 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 UNQ6126/PRO20091Q6UXV3 157 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 FOXL2NBQ6ZUU3 175 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 ZDHHC22Q8N966 263 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 C10orf82Q8WW14 230 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 BPIFA2Q96DR5 249 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 ZMYND19Q96E35 227 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-204ENST00000462475 PRRC1Q96M27 445 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 RBP7Q96R05 134 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 CYSLTR2Q9NS75 346 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 CGGBP1Q9UFW8 167 aaPredicted RBP13.62□□□□□ -0.23
COL7A1-204ENST00000462475 TRRAPQ9Y4A5 3859 aa13.62□□□□□ -0.23
COL7A1-204ENST00000462475 TRAV27A0A087WT01 109 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 FAM220BPB1ANY3 271 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 H3BSA7 217 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 H7C1C5 153 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 WIPF1O43516 503 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 PRSS23O95084 383 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 IFNA14P01570 189 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 SCG5P05408 212 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 CD55P08174 381 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 GATA3P23771 443 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 ZFP36P26651 326 aaKnown RBP13.61□□□□□ -0.23
COL7A1-204ENST00000462475 CTXN1P60606 82 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 LCN6P62502 163 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 FHL1Q13642 323 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 ENDOGQ14249 297 aaKnown RBP13.61□□□□□ -0.23
COL7A1-204ENST00000462475 COQ5Q5HYK3 327 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 ALDH16A1Q8IZ83 802 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 TPD52L3Q96J77 140 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 C4orf45Q96LM5 186 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 POFUT1Q9H488 388 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 MAN2C1Q9NTJ4 1040 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 KLHL21Q9UJP4 597 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 ZDHHC8Q9ULC8 765 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 TIMM10BQ9Y5J6 103 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 WNK2Q9Y3S1 2297 aa13.61□□□□□ -0.23
COL7A1-204ENST00000462475 DYSFO75923 2080 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 IGHV2-70P01814 119 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 MSR1P21757 451 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 KDELR2P33947 212 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 LIPAP38571 399 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 YAP1P46937 504 aaKnown RBP13.6□□□□□ -0.23
COL7A1-204ENST00000462475 PCBD1P61457 104 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 TNFAIP6P98066 277 aaPredicted RBP13.6□□□□□ -0.23
COL7A1-204ENST00000462475 ST3GAL3Q11203 375 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 PSG7Q13046 419 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 KLF10Q13118 480 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 AWAT1Q58HT5 328 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 ZMAT1Q5H9K5 638 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 MTX3Q5HYI7 312 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 FAM205BPQ63HN1 556 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 NRMQ8IXM6 262 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 C1orf174Q8IYL3 243 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 DEFB108BQ8NET1 73 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 OR13C2Q8NGS9 318 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 OR51A7Q8NH64 312 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 ST7LQ8TDW4 575 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 DVL3Q92997 716 aaPredicted RBP13.6□□□□□ -0.23
COL7A1-204ENST00000462475 DCLRE1CQ96SD1 692 aaKnown RBP13.6□□□□□ -0.23
COL7A1-204ENST00000462475 ELOVL3Q9HB03 270 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 EMC7Q9NPA0 242 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 POLE4Q9NR33 117 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 RHCGQ9UBD6 479 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 NPTNQ9Y639 398 aa13.6□□□□□ -0.23
COL7A1-204ENST00000462475 BBIP1A8MTZ0 92 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 J3KTA2 159 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 TIMM8AO60220 97 aaPredicted RBP13.59□□□□□ -0.23
COL7A1-204ENST00000462475 ABHD16AO95870 558 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 GUCA1AP43080 201 aaPredicted RBP13.59□□□□□ -0.23
COL7A1-204ENST00000462475 ARHGDIAP52565 204 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 UBA52P62987 128 aaKnown RBP13.59□□□□□ -0.23
COL7A1-204ENST00000462475 SF3A3Q12874 501 aaKnown RBP eCLIP13.59□□□□□ -0.235e-6■■■■■ 39.5
COL7A1-204ENST00000462475 OFCC1Q8IZS5 231 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 OR2T12Q8NG77 320 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 FNDC8Q8TC99 324 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 DIRC2Q96SL1 478 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 MMP26Q9NRE1 261 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 GMPR2Q9P2T1 348 aaKnown RBP13.59□□□□□ -0.23
COL7A1-204ENST00000462475 NDRG4Q9ULP0 352 aaKnown RBP13.59□□□□□ -0.23
COL7A1-204ENST00000462475 PPIAL4AQ9Y536 164 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 SNX13Q9Y5W8 968 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 TANC2Q9HCD6 1990 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 ARHGAP32A7KAX9 2087 aa13.59□□□□□ -0.23
COL7A1-204ENST00000462475 PPIAL4EA0A075B759 164 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 PPIAL4CA0A0B4J2A2 164 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 A6NIZ1 184 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 C12orf71A8MTZ7 269 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 PPIAL4DF5H284 164 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 FOXH1O75593 365 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 NPPAP01160 153 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 SBK2P0C263 348 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 PPIAL4FP0DN26 164 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 RAP1BP61224 184 aa13.58□□□□□ -0.24
COL7A1-204ENST00000462475 SEC61A1P61619 476 aaKnown RBP13.58□□□□□ -0.24
COL7A1-204ENST00000462475 RAP1AP62834 184 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms