RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HLA-HP01893 362 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 CD79AP11912 226 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 ARR3P36575 388 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 MTNR1AP48039 350 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 POU4F2Q12837 409 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 AQP6Q13520 282 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 GGTLC2Q14390 218 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 PPA1Q15181 289 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 TEX30Q5JUR7 227 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 TMEM53Q6P2H8 277 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 SHFQ7M4L6 423 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 TIGD4Q8IY51 512 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 OR6N2Q8NGY6 317 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 OR2AJ1Q8NGZ0 328 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 CNBD2Q96M20 576 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 WFIKKN1Q96NZ8 548 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 MED18Q9BUE0 208 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 WDR76Q9H967 626 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 MOV10Q9HCE1 1003 aaKnown RBP13.79□□□□□ -0.2
USP40-206ENST00000443711 B3GNT2Q9NY97 397 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 RPL36Q9Y3U8 105 aaKnown RBP13.79□□□□□ -0.2
USP40-206ENST00000443711 TIMM10BQ9Y5J6 103 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 SLC25A15Q9Y619 301 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 LRRK2Q5S007 2527 aa13.79□□□□□ -0.2
USP40-206ENST00000443711 A0A1W2PR80 420 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 TUBAL3A6NHL2 446 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 PRSS44E7EML9 344 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 SPARCP09486 303 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 PATE4P0C8F1 98 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 ATP6V1E1P36543 226 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 NUDT6P53370 316 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 RAB1AP62820 205 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 TUBA1BP68363 451 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 TUBA4AP68366 448 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 PIGFQ07326 219 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 TAB1Q15750 504 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 GSG1Q2KHT4 349 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 OTPQ5XKR4 325 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 KRT80Q6KB66 452 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 TUBA1AQ71U36 451 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 SLC16A9Q7RTY1 509 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 FGFBP3Q8TAT2 258 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 FBXO17Q96EF6 278 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 CNN2Q99439 309 aaKnown RBP13.78□□□□□ -0.2
USP40-206ENST00000443711 YIPF3Q9GZM5 350 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 ZNF224Q9NZL3 707 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 ASH2LQ9UBL3 628 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 CYB5R1Q9UHQ9 305 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 LHFPL6Q9Y693 200 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 RELNP78509 3460 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 PRR14LQ5THK1 2151 aa13.78□□□□□ -0.2
USP40-206ENST00000443711 C19orf84I3L1E1 186 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 SELENOFO60613 162 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 RAB36O95755 333 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 MMP7P09237 267 aaPredicted RBP13.77□□□□□ -0.21
USP40-206ENST00000443711 SBK2P0C263 348 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 DBTP11182 482 aaKnown RBP13.77□□□□□ -0.21
USP40-206ENST00000443711 CBR1P16152 277 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 ZNF32P17041 273 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 NAA10P41227 235 aaPredicted RBP13.77□□□□□ -0.21
USP40-206ENST00000443711 CSNK2BP67870 215 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 ZNF91Q05481 1191 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 SCRN3Q0VDG4 424 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 MED21Q13503 144 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 SNTB1Q13884 538 aaKnown RBP13.77□□□□□ -0.21
USP40-206ENST00000443711 SMN1Q16637 294 aaKnown RBP13.77□□□□□ -0.21
USP40-206ENST00000443711 PCK2Q16822 640 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 KLHL22Q53GT1 634 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 C6orf141Q5SZD1 244 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 MDP1Q86V88 176 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 LINC00346Q8IVM7 164 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 FAM169BQ8N8A8 192 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 ZNF454Q8N9F8 522 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 GJC3Q8NFK1 279 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 OR51G2Q8NGK0 314 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 LINC01560Q8TB33 94 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 RNFT2Q96EX2 444 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 DACH2Q96NX9 599 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 ADGRL4Q9HBW9 690 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 AMBNQ9NP70 447 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 NGBQ9NPG2 151 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 FBXL3Q9UKT7 428 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 LRRC42Q9Y546 428 aa13.77□□□□□ -0.21
USP40-206ENST00000443711 ZNF503-AS2A6NEH8 195 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 CASKO14936 926 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 THBDP07204 575 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 MRPL3P09001 348 aaKnown RBP13.76□□□□□ -0.21
USP40-206ENST00000443711 KIR2DL3P43628 341 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 CXCR4P61073 352 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 HIST1H3AP68431 136 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 PLP2Q04941 152 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 HIST2H3PS2Q5TEC6 136 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 LAIR2Q6ISS4 152 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 ALKBH2Q6NS38 261 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 SLC18B1Q6NT16 456 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 CORO6Q6QEF8 472 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 C22orf34Q6ZV56 151 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 HIST2H3AQ71DI3 136 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 DPY19L4Q7Z388 723 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 WFDC8Q8IUA0 241 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms