RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 KPNB1Q14974 876 aaKnown RBP16.12■□□□□ 0.17
SHH-204ENST00000441114 ADIPOQQ15848 244 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 ATP6AP1Q15904 470 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 MEP1BQ16820 701 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 C11orf71Q6IPW1 123 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 ZNF774Q6NX45 483 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 SHQ1Q6PI26 577 aaKnown RBP16.12■□□□□ 0.17
SHH-204ENST00000441114 CD300LDQ6UXZ3 194 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 YTHDF3Q7Z739 585 aaKnown RBP16.12■□□□□ 0.17
SHH-204ENST00000441114 LNX2Q8N448 690 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 PAQR4Q8N4S7 273 aaPredicted RBP16.12■□□□□ 0.17
SHH-204ENST00000441114 NPEPL1Q8NDH3 523 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 WFDC11Q8NEX6 87 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 OR2T33Q8NG76 320 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 OR1J2Q8NGS2 313 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 OR5K1Q8NHB7 308 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 LRTOMTQ8WZ04 291 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 SNX18Q96RF0 628 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 WNT5BQ9H1J7 359 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 C1orf198Q9H425 327 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 ZNF701Q9NV72 531 aaPredicted RBP16.12■□□□□ 0.17
SHH-204ENST00000441114 KIF17Q9P2E2 1029 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 GDF2Q9UK05 429 aaPredicted RBP16.12■□□□□ 0.17
SHH-204ENST00000441114 BAIAP2Q9UQB8 552 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 POLR1DQ9Y2S0 133 aa16.12■□□□□ 0.17
SHH-204ENST00000441114 IGLV1-36A0A0B4J1U3 117 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 GPRIN2O60269 458 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 HLA-DQA2P01906 255 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 STOMP27105 288 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 PYCR1P32322 319 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 SHEQ5VZ18 495 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 KRTAP1-3Q8IUG1 177 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 ALDH16A1Q8IZ83 802 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 SLC37A3Q8NCC5 494 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 ICA1LQ8NDH6 482 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 PYDC1Q8WXC3 89 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 DUS3LQ96G46 650 aaKnown RBP16.11■□□□□ 0.17
SHH-204ENST00000441114 FZR1Q9UM11 496 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 USF3Q68DE3 2245 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 OTOGQ6ZRI0 2925 aa16.11■□□□□ 0.17
SHH-204ENST00000441114 ARID1AO14497 2285 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 C5orf49A4QMS7 147 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 GDI2P50395 445 aaKnown RBP16.1■□□□□ 0.17
SHH-204ENST00000441114 MST1LQ2TV78 715 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 ZNF362Q5T0B9 420 aaPredicted RBP16.1■□□□□ 0.17
SHH-204ENST00000441114 TGIF2LYQ8IUE0 185 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 OR10H5Q8NGA6 315 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 OR9Q1Q8NGQ5 310 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 NRBF2Q96F24 287 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 BDH2Q9BUT1 245 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 GRIP2Q9C0E4 1043 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 RACGAP1Q9H0H5 632 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 SEMA6AQ9H2E6 1030 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 ZNF442Q9H7R0 627 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 KLHL21Q9UJP4 597 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 CMAHPQ9Y471 501 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 FKBP7Q9Y680 259 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 PMF1-BGLAPU3KQ54 211 aa16.1■□□□□ 0.17
SHH-204ENST00000441114 LOC100509620A0A075B734 347 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 RIIAD1A6NNX1 92 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 B9A039 149 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 G3V2T6 193 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 LCKP06239 509 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 GAAP10253 952 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 FCGR1AP12314 374 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 BMP4P12644 408 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 OSMP13725 252 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 PAX1P15863 534 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 ZNF23P17027 643 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 LSM6P62312 80 aaKnown RBP16.09■□□□□ 0.17
SHH-204ENST00000441114 SNRPD2P62316 118 aaKnown RBP16.09■□□□□ 0.17
SHH-204ENST00000441114 SCRN3Q0VDG4 424 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 AQP6Q13520 282 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 CRMP1Q14194 572 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 GINS1Q14691 196 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 RAB35Q15286 201 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 SWI5Q1ZZU3 235 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 SYT9Q86SS6 491 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 ZBTB46Q86UZ6 589 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 SVOPLQ8N434 492 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 PROKR2Q8NFJ6 384 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 OR51L1Q8NGJ5 315 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 OTULINQ96BN8 352 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 POM121L2Q96KW2 1035 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 Q96MF0 132 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 DDOQ99489 341 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 PLK3Q9H4B4 646 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 ASH2LQ9UBL3 628 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 AKAP9Q99996 3911 aa16.09■□□□□ 0.17
SHH-204ENST00000441114 SGCEO43556 437 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 DOK2O60496 412 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 IFNGP01579 166 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 IGHV4-39P01824 125 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 TFP02787 698 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 GYPBP06028 91 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 GRK5P34947 590 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 GLRXP35754 106 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 DAPP51397 102 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 ACTR3P61158 418 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 ERVS71-1P61550 626 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms