RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 EIF1AXP47813 144 aaKnown RBP18.76■□□□□ 0.59
PTPRF-207ENST00000436724 CCL11P51671 97 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 RAC3P60763 192 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 SLC17A1Q14916 467 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 TAB1Q15750 504 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 ODF4Q2M2E3 257 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 GLB1L2Q8IW92 636 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 OR9K2Q8NGE7 335 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 C11orf40Q8WZ69 217 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 MCHR2Q969V1 340 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 NAA11Q9BSU3 229 aaPredicted RBP18.76■□□□□ 0.59
PTPRF-207ENST00000436724 ZNF407Q9C0G0 2248 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 NPIPA2E9PIF3 369 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 NPIPA3F8WFD2 350 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 AGFG1P52594 562 aaKnown RBP18.76■□□□□ 0.59
PTPRF-207ENST00000436724 ALKBH1Q13686 389 aaKnown RBP18.76■□□□□ 0.59
PTPRF-207ENST00000436724 OR7E24Q6IFN5 339 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 SLC25A25Q6KCM7 469 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 LRFN4Q6PJG9 635 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 DCXRQ7Z4W1 244 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 SYT9Q86SS6 491 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 OR10D3Q8NH80 312 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 ADGRG7Q96K78 797 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 SEC61A2Q9H9S3 476 aa18.76■□□□□ 0.59
PTPRF-207ENST00000436724 TRABD2BA6NFA1 517 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 H3BSH0 61 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 NME2P1O60361 137 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 QDPRP09417 244 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 NME2P22392 152 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 MTNR1BP49286 362 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 MEOX1P50221 254 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 OR10A3P58181 314 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 SCN1BQ07699 218 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 CLN3Q13286 438 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 DDI2Q5TDH0 399 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ESPNLQ6ZVH7 1005 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ZNF679Q8IYX0 411 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 TMEM251Q8N6I4 163 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ROBO4Q8WZ75 1007 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.75■□□□□ 0.596e-7■■■□□ 17.6
PTPRF-207ENST00000436724 B4GALT7Q9UBV7 327 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 RBMX2Q9Y388 322 aaKnown RBP18.75■□□□□ 0.59
PTPRF-207ENST00000436724 URB1O60287 2271 aaKnown RBP18.75■□□□□ 0.59
PTPRF-207ENST00000436724 VAMP5O95183 116 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ARG2P78540 354 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 PLGLB1Q02325 96 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ASAH1Q13510 395 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 HIST3H3Q16695 136 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ZNF544Q6NX49 715 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 KRT77Q7Z794 578 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 RDH10Q8IZV5 341 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 PRSS35Q8N3Z0 413 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 GDPD1Q8N9F7 314 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ZIC4Q8N9L1 334 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 OR2G2Q8NGZ5 317 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 OR6F1Q8NGZ6 308 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ASB17Q8WXJ9 295 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ZNF845Q96IR2 970 aaPredicted RBP18.75■□□□□ 0.59
PTPRF-207ENST00000436724 MFRPQ9BY79 579 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 SLC6A15Q9H2J7 730 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 KLHL9Q9P2J3 617 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 ZNF281Q9Y2X9 895 aa18.75■□□□□ 0.59
PTPRF-207ENST00000436724 SPENQ96T58 3664 aaKnown RBP18.75■□□□□ 0.59
PTPRF-207ENST00000436724 DNAJC13O75165 2243 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 ACOD1A6NK06 481 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 TMCC2O75069 709 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 PNPP00491 289 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 HPNP05981 417 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 CD1AP06126 327 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 LAP3P28838 519 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 SOX8P57073 446 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 RTP5Q14D33 572 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 PCK2Q16822 640 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 PHYHD1Q5SRE7 291 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 FDCSPQ8NFU4 85 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 OR52N5Q8NH56 324 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 OR2V1Q8NHB1 315 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 ST7LQ8TDW4 575 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 PPP1R14AQ96A00 147 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 TMEM165Q9HC07 324 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 EMC7Q9NPA0 242 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 GPRIN2O60269 458 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 SERPINA3P01011 423 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 SELENOPP49908 381 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 ROM1Q03395 351 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 POU4F3Q15319 338 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 BCL2A1Q16548 175 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 RSBN1Q5VWQ0 802 aaPredicted RBP18.74■□□□□ 0.59
PTPRF-207ENST00000436724 SLC25A47Q6Q0C1 308 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 PLXDC2Q6UX71 529 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 HDDC2Q7Z4H3 204 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.74■□□□□ 0.59
PTPRF-207ENST00000436724 OR5AK2Q8NH90 309 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 AP3S1Q92572 193 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 OR2M2Q96R28 347 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 SOSTQ9BQB4 213 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 COMMD3Q9UBI1 195 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 FBXL3Q9UKT7 428 aa18.74■□□□□ 0.59
PTPRF-207ENST00000436724 KLF13Q9Y2Y9 288 aaPredicted RBP18.74■□□□□ 0.59
PTPRF-207ENST00000436724 LRP12Q9Y561 859 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms