RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 UBE2G1P62253 170 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 UBE2IP63279 158 aaKnown RBP14.09□□□□□ -0.15
PTPRF-206ENST00000429895 YOD1Q5VVQ6 348 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-206ENST00000429895 KCTD12Q96CX2 325 aaKnown RBP14.09□□□□□ -0.15
PTPRF-206ENST00000429895 SEC22CQ9BRL7 303 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 SLCO1B1Q9Y6L6 691 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 CNR1P21554 472 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 BTG2P78543 158 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 PLAC9Q5JTB6 97 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 DOK3Q7L591 496 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 CCL4L1Q8NHW4 92 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 TSLPQ969D9 159 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 STACQ99469 402 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 UBQLN3Q9H347 655 aa14.09□□□□□ -0.15
PTPRF-206ENST00000429895 EIF4E2O60573 245 aaKnown RBP14.08□□□□□ -0.15
PTPRF-206ENST00000429895 ICOSLGO75144 302 aa14.08□□□□□ -0.15
PTPRF-206ENST00000429895 CMPK2Q5EBM0 449 aa14.08□□□□□ -0.15
PTPRF-206ENST00000429895 MS4A6EQ96DS6 147 aa14.08□□□□□ -0.15
PTPRF-206ENST00000429895 BCO1Q9HAY6 547 aa14.08□□□□□ -0.15
PTPRF-206ENST00000429895 ETV7Q9Y603 341 aa14.08□□□□□ -0.15
PTPRF-206ENST00000429895 SH2D1BO14796 132 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 LAP3P28838 519 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 ZDHHC16Q969W1 377 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SLCO4A1Q96BD0 722 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 CTSFQ9UBX1 484 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 KLF13Q9Y2Y9 288 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 NUMA1Q14980 2115 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 CSN1S1P47710 185 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 GPR12P47775 334 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 ZMAT1Q5H9K5 638 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SLC35D3Q5M8T2 416 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 OTPQ5XKR4 325 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 OR6M1Q8NGM8 313 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SYT11Q9BT88 431 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 EXOSC3Q9NQT5 275 aaKnown RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 NDRG3Q9UGV2 375 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 NDRG4Q9ULP0 352 aaKnown RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 FAM221AA4D161 298 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SYT5O00445 386 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SLC16A6O15403 523 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SOD1P00441 154 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 ZNF266Q14584 549 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 DUSP6Q16828 381 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 ZNF705AQ6ZN79 300 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 SLC25A43Q8WUT9 341 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 C20orf24Q9BUV8 137 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 OR52A5Q9H2C5 316 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 FABP7O15540 132 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 GLAP06280 429 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 MMP11P24347 488 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 TAGLN2P37802 199 aaKnown RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 ETV6P41212 452 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 RBP2P50120 134 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 LGI3Q8N145 548 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 CCDC74BQ96LY2 380 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 BARX1Q9HBU1 254 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-206ENST00000429895 TIMM10BQ9Y5J6 103 aa14.08□□□□□ -0.16
PTPRF-206ENST00000429895 PRRT4C9JH25 899 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 HPNP05981 417 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 THBS1P07996 1170 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 GLB1P16278 677 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 RDH5Q92781 318 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ANKRD61A6NGH8 418 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 B4GALT3O60512 393 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 UBL3O95164 117 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 FABP1P07148 127 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 MRPL19P49406 292 aaKnown RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 TMEM240Q5SV17 173 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 TMEM182Q6ZP80 229 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 NLRP8Q86W28 1048 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 SKA3Q8IX90 412 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 RHOXF1Q8NHV9 184 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ZCCHC4Q9H5U6 513 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ASH2LQ9UBL3 628 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 RNF150Q9ULK6 438 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 MEIKINA0A087WXM9 373 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 HLA-HP01893 362 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 TCRBP04435 133 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ACKR3P25106 362 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 RPS16P62249 146 aaKnown RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 RTN4RL1Q86UN2 441 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 SFT2D1Q8WV19 159 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 SLAMF6Q96DU3 332 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 TRMT61AQ96FX7 289 aaKnown RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 TECTBQ96PL2 329 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 FAM173AQ9BQD7 235 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 LRRC37A3O60309 1634 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 TEX51A0A1B0GUA7 166 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 SEC14L6B5MCN3 397 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 OR8U1Q8NH10 309 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 GATA6Q92908 595 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ZBED3Q96IU2 234 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 FAM53CQ9NYF3 392 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 SLC23A1Q9UHI7 598 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ZNF346Q9UL40 294 aaKnown RBP14.07□□□□□ -0.16
PTPRF-206ENST00000429895 GAB2Q9UQC2 676 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 ADH4P08319 380 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 NOVP48745 357 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 MLF1P58340 268 aa14.07□□□□□ -0.16
PTPRF-206ENST00000429895 EXD3Q8N9H8 876 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms