RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RHCGQ9UBD6 479 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 NPIPB13A6NJU9 1138 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 BBIP1A8MTZ0 92 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 NPIPB4C9JG80 1138 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 SPRY1O43609 319 aaPredicted RBP12.3□□□□□ -0.44
SDC1-204ENST00000429035 DOK2O60496 412 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 NGFP01138 241 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 IGF2P01344 180 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 CST2P09228 141 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 THRBP10828 461 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 MSR1P21757 451 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 RBMXP38159 391 aaKnown RBP12.3□□□□□ -0.44
SDC1-204ENST00000429035 HTR5AP47898 357 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 PCBD1P61457 104 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 KLF10Q13118 480 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 SPRNQ5BIV9 151 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 MTX3Q5HYI7 312 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 MBNL2Q5VZF2 373 aaKnown RBP12.3□□□□□ -0.44
SDC1-204ENST00000429035 TREML1Q86YW5 311 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 NRMQ8IXM6 262 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 OR2T12Q8NG77 320 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 FAM216AQ8WUB2 273 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 C10orf82Q8WW14 230 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 LIPHQ8WWY8 451 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 NMD3Q96D46 503 aaKnown RBP12.3□□□□□ -0.44
SDC1-204ENST00000429035 ZMYND19Q96E35 227 aaPredicted RBP12.3□□□□□ -0.44
SDC1-204ENST00000429035 EMC7Q9NPA0 242 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 CYSLTR2Q9NS75 346 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 DCAF16Q9NXF7 216 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 PPIAL4AQ9Y536 164 aa12.3□□□□□ -0.44
SDC1-204ENST00000429035 LOC100653049A0A140TA62 436 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 A6NIZ1 184 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 EFCAB9A8MZ26 197 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 J3KTA2 159 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 KRT34O76011 436 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 UBOX5O94941 541 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 PRSS23O95084 383 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 IGHMP01871 453 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 SBK2P0C263 348 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 GSTM3P21266 225 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 KDELR2P33947 212 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 RPL4P36578 427 aaKnown RBP12.29□□□□□ -0.44
SDC1-204ENST00000429035 LIPAP38571 399 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 GPR4P46093 362 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 LIMS1P48059 325 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 ARFIP2P53365 341 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 RAP1BP61224 184 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 RAP1AP62834 184 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 ENDOGQ14249 297 aaKnown RBP12.29□□□□□ -0.44
SDC1-204ENST00000429035 ARMCX4Q5H9R4 360 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 FAM27BQ5VT28 67 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 METTL21CQ5VZV1 264 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 FAM205BPQ63HN1 556 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 C1orf94Q6P1W5 598 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 ARL9Q6T311 187 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 USP43Q70EL4 1123 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 HDXQ7Z353 690 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 OAFQ86UD1 273 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 PCYOX1LQ8NBM8 494 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 FNDC8Q8TC99 324 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 LZICQ8WZA0 190 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 C4orf45Q96LM5 186 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 ZNF583Q96ND8 569 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 FNDC11Q9BVV2 318 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 POFUT1Q9H488 388 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 RERGLQ9H628 205 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 GID8Q9NWU2 228 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 CGGBP1Q9UFW8 167 aaPredicted RBP12.29□□□□□ -0.44
SDC1-204ENST00000429035 NDRG4Q9ULP0 352 aaKnown RBP12.29□□□□□ -0.44
SDC1-204ENST00000429035 A4GNTQ9UNA3 340 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 TIMM10BQ9Y5J6 103 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 NPTNQ9Y639 398 aa12.29□□□□□ -0.44
SDC1-204ENST00000429035 ELOVL7A1L3X0 281 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 TMEM89A2RUT3 159 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 C12orf71A8MTZ7 269 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 H3BSA7 217 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 FOXH1O75593 365 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 ZNF682O95780 498 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 IFNW1P05000 195 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 TSPAN19P0C672 248 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 TNFSF4P23510 183 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 GATA3P23771 443 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 SLC9A3P48764 834 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 TRAM2Q15035 370 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 COQ5Q5HYK3 327 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 OTPQ5XKR4 325 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 ZNF730Q6ZMV8 503 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 VTCN1Q7Z7D3 282 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 OFCC1Q8IZS5 231 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 OR2Z1Q8NG97 314 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 DIRC2Q96SL1 478 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 ESM1Q9NQ30 184 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 POLE4Q9NR33 117 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 DDX28Q9NUL7 540 aaKnown RBP12.28□□□□□ -0.44
SDC1-204ENST00000429035 FGFR1OP2Q9NVK5 253 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 ARGLU1Q9NWB6 273 aaPredicted RBP12.28□□□□□ -0.44
SDC1-204ENST00000429035 GMPR2Q9P2T1 348 aaKnown RBP12.28□□□□□ -0.44
SDC1-204ENST00000429035 ZDHHC8Q9ULC8 765 aa12.28□□□□□ -0.44
SDC1-204ENST00000429035 XKRYO14609 159 aa12.27□□□□□ -0.45
SDC1-204ENST00000429035 FUT4P22083 530 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms