RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SPATA46Q5T0L3 261 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 SMARCD3Q6STE5 483 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 RFPL4BQ6ZWI9 263 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 ZNF786Q8N393 782 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 CCDC197Q8NCU1 140 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 ICA1LQ8NDH6 482 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 OR1J2Q8NGS2 313 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 UBASH3BQ8TF42 649 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 TSSK2Q96PF2 358 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 KCNN2Q9H2S1 579 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 NDE1Q9NXR1 346 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 VSX1Q9NZR4 365 aaPredicted RBP16.31■□□□□ 0.2
SF3A1-202ENST00000411423 TAAR3PQ9P1P4 343 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 ACTR3BQ9P1U1 418 aa16.31■□□□□ 0.2
SF3A1-202ENST00000411423 FBXO9Q9UK97 447 aaPredicted RBP16.31■□□□□ 0.2
SF3A1-202ENST00000411423 COA3Q9Y2R0 106 aaPredicted RBP16.31■□□□□ 0.2
SF3A1-202ENST00000411423 A0A1W2PPW3 197 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 LRP5LA4QPB2 252 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 XKRYO14609 159 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 SLC16A7O60669 478 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 NGFP01138 241 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 MPV17P39210 176 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 MAGEB1P43366 347 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 GSSP48637 474 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 PPP1R8Q12972 351 aaKnown RBP16.3■□□□□ 0.2
SF3A1-202ENST00000411423 TRIP10Q15642 601 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 SPATS1Q496A3 300 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 PGBD2Q6P3X8 592 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 DPY19L2P2Q6ZN68 376 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 OR1J1Q8NGS3 322 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 SYNPRQ8TBG9 265 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 FANK1Q8TC84 345 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 YIPF5Q969M3 257 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 CLPTM1LQ96KA5 538 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 NUAK2Q9H093 628 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 OR52D1Q9H346 318 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 VNN3Q9NY84 501 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 TIMM10BQ9Y5J6 103 aa16.3■□□□□ 0.2
SF3A1-202ENST00000411423 OR10H3O60404 316 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 LILRA1O75019 489 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 FPR3P25089 353 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 RAD52P43351 418 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 MAGEA2P43356 314 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 GLO1Q04760 184 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 RFX4Q33E94 735 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 GPR139Q6DWJ6 353 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 OR9Q2Q8NGE9 314 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 OR4C15Q8NGM1 316 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 MCUR1Q96AQ8 359 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 MARS2Q96GW9 593 aaKnown RBP16.29■□□□□ 0.2
SF3A1-202ENST00000411423 SAMD8Q96LT4 415 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 BTBD10Q9BSF8 475 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 BCL2L14Q9BZR8 327 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 MS4A5Q9H3V2 200 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 POFUT1Q9H488 388 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 RERGLQ9H628 205 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 LYVE1Q9Y5Y7 322 aa16.29■□□□□ 0.2
SF3A1-202ENST00000411423 A8MV72 311 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-202ENST00000411423 AHCYL1O43865 530 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 ZNF23P17027 643 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 CALB2P22676 271 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 GDI2P50395 445 aaKnown RBP16.28■□□□□ 0.2
SF3A1-202ENST00000411423 HMGA2P52926 109 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 KLF3P57682 345 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-202ENST00000411423 SMIM11AP58511 58 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 LCN8Q6JVE9 175 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 C1orf94Q6P1W5 598 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 SLC25A40Q8TBP6 338 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 C11orf40Q8WZ69 217 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 MSI2Q96DH6 328 aaKnown RBP16.28■□□□□ 0.2
SF3A1-202ENST00000411423 ERMAPQ96PL5 475 aaPredicted RBP16.28■□□□□ 0.2
SF3A1-202ENST00000411423 LRMDAQ9H2I8 198 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 TAS2R1Q9NYW7 299 aa16.28■□□□□ 0.2
SF3A1-202ENST00000411423 IGLV1-36A0A0B4J1U3 117 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 C12orf71A8MTZ7 269 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 C17orf100A8MU93 164 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 ICMTO60725 284 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 KHDRBS3O75525 346 aaKnown RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 ERCC1P07992 297 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 TACSTD2P09758 323 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 GAAP10253 952 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 APEHP13798 732 aaKnown RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 HIST1H1CP16403 213 aaKnown RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 RPS6KA3P51812 740 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 MNAT1P51948 309 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 HNRNPA0Q13151 305 aaKnown RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 MEP1BQ16820 701 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 NKPD1Q17RQ9 610 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 CCDC92Q53HC0 331 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 CYB5R2Q6BCY4 276 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 ZNF770Q6IQ21 691 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 ZNF620Q6ZNG0 422 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 VASH1Q7L8A9 365 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 SYT9Q86SS6 491 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 HIPK1Q86Z02 1210 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 GNPDA2Q8TDQ7 276 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 IPCEF1Q8WWN9 437 aaPredicted RBP16.27■□□□□ 0.2
SF3A1-202ENST00000411423 SLC7A6Q92536 515 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 NMNAT3Q96T66 252 aa16.27■□□□□ 0.2
SF3A1-202ENST00000411423 OR2J1Q9GZK6 312 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms