RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 SNRNP70P08621 437 aaKnown RBP16.57■□□□□ 0.24
COL18A1-204ENST00000400337 MSL3P1P0C860 447 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 OTPQ5XKR4 325 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 HEPHL1Q6MZM0 1159 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 SLC25A21Q9BQT8 299 aaPredicted RBP16.57■□□□□ 0.24
COL18A1-204ENST00000400337 RHNO1Q9BSD3 238 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 RREB1Q92766 1687 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 TPPPO94811 219 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 SIX6O95475 246 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 NKX6-1P78426 367 aaPredicted RBP16.57■□□□□ 0.24
COL18A1-204ENST00000400337 SHEQ5VZ18 495 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 OR4N2Q8NGD1 307 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 ALG14Q96F25 216 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 SLC19A3Q9BZV2 496 aa16.57■□□□□ 0.24
COL18A1-204ENST00000400337 ZNF133P52736 654 aaPredicted RBP16.56■□□□□ 0.24
COL18A1-204ENST00000400337 PNLIPRP2P54317 469 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 F2RL1P55085 397 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 RNLSQ5VYX0 342 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 KIRREL2Q6UWL6 708 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 FAM109AQ8N4B1 249 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 TP53I13Q8NBR0 393 aaPredicted RBP16.56■□□□□ 0.24
COL18A1-204ENST00000400337 CPNE4Q96A23 557 aaPredicted RBP16.56■□□□□ 0.24
COL18A1-204ENST00000400337 ASPDHA6ND91 283 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 SNAPINO95295 136 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 RAF1P04049 648 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 CALCBP10092 127 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 EDDM3BP56851 147 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 SERTAD4Q9NUC0 356 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 LOXL2Q9Y4K0 774 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 CISD3P0C7P0 127 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 IAH1Q2TAA2 248 aaPredicted RBP16.56■□□□□ 0.24
COL18A1-204ENST00000400337 PHLDA2Q53GA4 152 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 TMEM71Q6P5X7 295 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 OR52I2Q8NH67 350 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 OPALINQ96PE5 141 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 MENTQ9BUN1 341 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 CNTNAP3Q9BZ76 1288 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 PRDM7Q9NQW5 492 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 SHROOM3Q8TF72 1996 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 TMEM265A0A087WTH1 108 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 FRG2CA6NGY1 282 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 PMS2P2O95744 297 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 PTBP1P26599 531 aaKnown RBP eCLIP16.56■□□□□ 0.242e-6■■■■□ 20.4
COL18A1-204ENST00000400337 NKG7Q16617 165 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 MDGA2Q7Z553 956 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 HAS2Q92819 552 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 RBMXL1Q96E39 390 aaKnown RBP16.56■□□□□ 0.24
COL18A1-204ENST00000400337 RNF170Q96K19 258 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 HRASLSQ9HDD0 168 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 WBP1LQ9NX94 342 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 PRSS37A4D1T9 235 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 GABARAPH6UMI1 98 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 SOX18P35713 384 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 THEM4Q5T1C6 240 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 KMT5CQ86Y97 462 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 OR1M1Q8NGA1 313 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 OR5H6Q8NGV6 325 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 ANKRD9Q96BM1 317 aaPredicted RBP16.56■□□□□ 0.24
COL18A1-204ENST00000400337 B3GAT1Q9P2W7 334 aa16.56■□□□□ 0.24
COL18A1-204ENST00000400337 ANXA7P20073 488 aaKnown RBP16.55■□□□□ 0.24
COL18A1-204ENST00000400337 FABP5Q01469 135 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 OR8B8Q15620 311 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 OR2L13Q8N349 312 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 UCN3Q969E3 161 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 EID2BQ96D98 161 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 ARPC5LQ9BPX5 153 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 C1QTNF6Q9BXI9 259 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 NECAP2Q9NVZ3 263 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 A8MXE2 369 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 LINC00299Q6ZSB3 139 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 CALHM3Q86XJ0 350 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 UBALD2Q8IYN6 164 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 OR5AS1Q8N127 324 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 OR10K1Q8NGX5 313 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 EMG1Q92979 244 aaKnown RBP16.55■□□□□ 0.24
COL18A1-204ENST00000400337 FAM234AQ9H0X4 552 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 ZNF385DQ9H6B1 395 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 NTN4Q9HB63 628 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 USP54Q70EL1 1684 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 EFSO43281 561 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 WNT11O96014 354 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 RPA2P15927 270 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 SNCAP37840 140 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 SRPXP78539 464 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 HNF4GQ14541 408 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 SYS1Q8N2H4 156 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 LILRA5A6NI73 299 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 POFUT1Q9H488 388 aa16.55■□□□□ 0.24
COL18A1-204ENST00000400337 RAE1P78406 368 aaKnown RBP16.54■□□□□ 0.24
COL18A1-204ENST00000400337 PTPRZ1P23471 2315 aaPredicted RBP16.54■□□□□ 0.24
COL18A1-204ENST00000400337 KITLGP21583 273 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 TBXA2RP21731 343 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 RNF4P78317 190 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 DGCR2P98153 550 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 EDDM3AQ14507 147 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 ING1Q9UK53 422 aaPredicted RBP16.54■□□□□ 0.24
COL18A1-204ENST00000400337 LAP3P28838 519 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 FAPQ12884 760 aa16.54■□□□□ 0.24
COL18A1-204ENST00000400337 PAN3Q58A45 887 aaKnown RBP16.54■□□□□ 0.24
COL18A1-204ENST00000400337 DYNC2LI1Q8TCX1 351 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms